Xutao Wang
| Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/curatedTBData |
| git_branch: RELEASE_3_16 |
| git_last_commit: ecbf3d0 |
| git_last_commit_date: 2022-11-01 11:27:16 -0400 (Tue, 01 Nov 2022) |
| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the curatedTBData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 85/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| curatedTBData 1.4.0 (landing page) Xutao Wang
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | |||||||
| Package: curatedTBData |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:curatedTBData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings curatedTBData_1.4.0.tar.gz |
| StartedAt: 2023-04-11 11:37:49 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 11:42:45 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 295.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: curatedTBData.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:curatedTBData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings curatedTBData_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/curatedTBData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘curatedTBData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘curatedTBData’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘curatedTBData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Note: found 1 marked UTF-8 string
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
combine_objects 13.148 0.516 14.683
curatedTBData 8.777 0.329 10.273
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘curatedTBData.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/curatedTBData.Rcheck/00check.log’
for details.
curatedTBData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL curatedTBData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘curatedTBData’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curatedTBData)
curatedTBData.Rcheck/tests/testthat.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(curatedTBData)
>
> test_check("curatedTBData")
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[ FAIL 0 | WARN 2 | SKIP 0 | PASS 21 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 21 ]
>
> proc.time()
user system elapsed
28.282 2.201 33.113
curatedTBData.Rcheck/curatedTBData-Ex.timings
| name | user | system | elapsed | |
| combine_objects | 13.148 | 0.516 | 14.683 | |
| curatedTBData | 8.777 | 0.329 | 10.273 | |
| subset_curatedTBData | 2.853 | 0.092 | 3.579 | |