Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the clustifyrdatahub package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 64/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
clustifyrdatahub 1.8.0 (landing page) Rui Fu
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: clustifyrdatahub |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:clustifyrdatahub.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings clustifyrdatahub_1.8.0.tar.gz |
StartedAt: 2023-04-11 11:34:54 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 11:36:56 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 121.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: clustifyrdatahub.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:clustifyrdatahub.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings clustifyrdatahub_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/clustifyrdatahub.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘clustifyrdatahub/DESCRIPTION’ ... OK * this is package ‘clustifyrdatahub’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘clustifyrdatahub’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘clustifyrdatahub.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
clustifyrdatahub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL clustifyrdatahub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘clustifyrdatahub’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-10-31 ** testing if installed package can be loaded from final location snapshotDate(): 2022-10-31 ** testing if installed package keeps a record of temporary installation path * DONE (clustifyrdatahub)
clustifyrdatahub.Rcheck/clustifyrdatahub-Ex.timings
name | user | system | elapsed | |
ref_MCA | 0.030 | 0.000 | 0.031 | |
ref_cortex_dev | 0.027 | 0.000 | 0.026 | |
ref_hema_microarray | 0.025 | 0.004 | 0.029 | |
ref_immgen | 0.028 | 0.000 | 0.028 | |
ref_moca_main | 0.024 | 0.004 | 0.028 | |
ref_mouse.rnaseq | 0.028 | 0.000 | 0.029 | |
ref_mouse_atlas | 0.028 | 0.000 | 0.029 | |
ref_pan_indrop | 0.025 | 0.004 | 0.029 | |
ref_pan_smartseq2 | 0.026 | 0.004 | 0.030 | |
ref_tabula_muris_drop | 0.026 | 0.004 | 0.030 | |
ref_tabula_muris_facs | 0.032 | 0.000 | 0.032 | |