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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for KEGGandMetacoreDzPathwaysGEO on nebbiolo2


To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 196/416HostnameOS / ArchINSTALLBUILDCHECK
KEGGandMetacoreDzPathwaysGEO 1.18.0  (landing page)
Gaurav Bhatti
Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
git_branch: RELEASE_3_16
git_last_commit: 1018d64
git_last_commit_date: 2022-11-01 11:01:20 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 1.18.0
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.18.0.tar.gz
StartedAt: 2023-04-11 11:55:30 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:56:17 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 47.4 seconds
RetCode: 0
Status:   OK  
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.7Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘KEGGandMetacoreDzPathwaysGEO.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.



Installation output

KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGandMetacoreDzPathwaysGEO)

Tests output


Example timings

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.2620.0240.286
GSE119062.4480.0682.515
GSE14924_CD40.1860.0080.194
GSE14924_CD80.1850.0160.201
GSE167590.2590.0120.270
GSE194200.1760.0080.183
GSE201640.0500.0040.054
GSE227800.1650.0080.173
GSE238780.6460.0240.669
GSE24739_G00.3570.0000.357
GSE24739_G10.3400.0120.352
GSE301530.4120.0160.428
GSE326760.5690.0240.594
GSE38666_epithelia0.2010.0320.234
GSE38666_stroma0.1520.0040.156
GSE41830.1870.0040.191
GSE420570.7370.0080.744
GSE73050.5370.0000.536
KEGGandMetacoreDzPathwaysGEO-package0.4400.0360.476