Back to Mac ARM64 build report for BioC 3.16
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-04-19 11:01:56 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for msPurity on kjohnson


To the developers/maintainers of the msPurity package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1281/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
msPurity 1.24.0  (landing page)
Thomas N. Lawson
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/msPurity
git_branch: RELEASE_3_16
git_last_commit: f0aecfe
git_last_commit_date: 2022-11-01 11:13:46 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    ERROR  skipped

Summary

Package: msPurity
Version: 1.24.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
StartedAt: 2023-04-17 17:13:52 -0400 (Mon, 17 Apr 2023)
EndedAt: 2023-04-17 17:44:15 -0400 (Mon, 17 Apr 2023)
EllapsedTime: 1822.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data msPurity
###
##############################################################################
##############################################################################


* checking for file ‘msPurity/DESCRIPTION’ ... OK
* preparing ‘msPurity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’ using rmarkdown
Sizes of mz and intensity arrays don't match.
Quitting from lines 92-94 (msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd) 
Error: processing vignette 'msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd' failed with diagnostics:
dims [product 0] do not match the length of object [2160]
--- failed re-building ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

--- re-building ‘msPurity-spectral-database-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-spectral-database-vignette.Rmd’

--- re-building ‘msPurity-vignette.Rmd’ using rmarkdown
--- finished re-building ‘msPurity-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘msPurity-lcmsms-data-processing-and-spectral-matching-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted