James W. MacDonald
| Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/copa |
| git_branch: RELEASE_3_16 |
| git_last_commit: 0e23335 |
| git_last_commit_date: 2022-11-01 10:40:51 -0400 (Tue, 01 Nov 2022) |
| Back to Mac ARM64 build report for BioC 3.16 |
|
This page was generated on 2023-04-19 11:01:54 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the copa package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 411/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| copa 1.66.0 (landing page) James W. MacDonald
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK | | |||||||
| Package: copa |
| Version: 1.66.0 |
| Command: rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.66.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R copa.buildbin-libdir |
| StartedAt: 2023-04-18 14:46:56 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 14:47:08 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 12.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: copa_1.66.0.tgz |
| PackageFileSize: 158.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh copa_1.66.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R copa.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=copa.buildbin-libdir copa_1.66.0.tar.gz' >>>>>>> * installing *source* package ‘copa’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c copa.c -o copa.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o copa.so copa.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: -undefined dynamic_lookup may not work with chained fixups installing to /Volumes/External/bbs-3.16-bioc-m1/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (copa) >>>>>>> >>>>>>> FIXING LINKS FOR copa.buildbin-libdir/copa/libs/copa.so >>>>>>> install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "copa.buildbin-libdir/copa/libs/copa.so" install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "copa.buildbin-libdir/copa/libs/copa.so" install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "copa.buildbin-libdir/copa/libs/copa.so"