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This page was generated on 2023-04-19 11:01:57 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ReactomeGSA on kjohnson


To the developers/maintainers of the ReactomeGSA package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1627/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
ReactomeGSA 1.12.0  (landing page)
Johannes Griss
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/ReactomeGSA
git_branch: RELEASE_3_16
git_last_commit: 8ff0616
git_last_commit_date: 2022-11-01 11:20:32 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ReactomeGSA
Version: 1.12.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ReactomeGSA
StartedAt: 2023-04-16 15:06:34 -0400 (Sun, 16 Apr 2023)
EndedAt: 2023-04-16 15:06:44 -0400 (Sun, 16 Apr 2023)
EllapsedTime: 10.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ReactomeGSA
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’
* installing *source* package ‘ReactomeGSA’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘analyse_sc_clusters’ with signature ‘object="Seurat"’: no definition for class “Seurat”
in method for ‘analyse_sc_clusters’ with signature ‘object="SingleCellExperiment"’: no definition for class “SingleCellExperiment”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="EList"’: no definition for class “EList”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="DGEList"’: no definition for class “DGEList”
in method for ‘add_dataset’ with signature ‘request="ReactomeAnalysisRequest",expression_values="ExpressionSet"’: no definition for class “ExpressionSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ReactomeGSA)