Back to Mac ARM64 build report for BioC 3.16
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2023-04-19 11:01:55 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for MassSpecWavelet on kjohnson


To the developers/maintainers of the MassSpecWavelet package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1101/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
MassSpecWavelet 1.64.1  (landing page)
Sergio Oller Moreno
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/MassSpecWavelet
git_branch: RELEASE_3_16
git_last_commit: 3d555a8
git_last_commit_date: 2023-01-30 13:37:34 -0400 (Mon, 30 Jan 2023)
kjohnsonmacOS 13.0 Ventura / arm64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MassSpecWavelet
Version: 1.64.1
Command: rm -rf MassSpecWavelet.buildbin-libdir && mkdir MassSpecWavelet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MassSpecWavelet_1.64.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MassSpecWavelet.buildbin-libdir
StartedAt: 2023-04-18 16:57:55 -0400 (Tue, 18 Apr 2023)
EndedAt: 2023-04-18 16:58:07 -0400 (Tue, 18 Apr 2023)
EllapsedTime: 12.3 seconds
RetCode: 0
Status:   OK  
PackageFile: MassSpecWavelet_1.64.1.tgz
PackageFileSize: 1.944 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MassSpecWavelet.buildbin-libdir && mkdir MassSpecWavelet.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MassSpecWavelet_1.64.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MassSpecWavelet.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MassSpecWavelet.buildbin-libdir MassSpecWavelet_1.64.1.tar.gz'
>>>>>>> 

* installing *source* package ‘MassSpecWavelet’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c find_local_maximum.c -o find_local_maximum.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o MassSpecWavelet.so find_local_maximum.o init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Volumes/External/bbs-3.16-bioc-m1/meat/MassSpecWavelet.buildbin-libdir/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MassSpecWavelet)


>>>>>>> 
>>>>>>> FIXING LINKS FOR MassSpecWavelet.buildbin-libdir/MassSpecWavelet/libs/MassSpecWavelet.so
>>>>>>> 

install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "MassSpecWavelet.buildbin-libdir/MassSpecWavelet/libs/MassSpecWavelet.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "MassSpecWavelet.buildbin-libdir/MassSpecWavelet/libs/MassSpecWavelet.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "MassSpecWavelet.buildbin-libdir/MassSpecWavelet/libs/MassSpecWavelet.so"