Kenong Su
| Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/FEAST |
| git_branch: RELEASE_3_16 |
| git_last_commit: 7d99b9d |
| git_last_commit_date: 2022-11-01 11:24:45 -0400 (Tue, 01 Nov 2022) |
| Back to Mac ARM64 build report for BioC 3.16 |
|
This page was generated on 2023-04-19 11:01:54 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the FEAST package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 669/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| FEAST 1.6.0 (landing page) Kenong Su
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK | | |||||||
| Package: FEAST |
| Version: 1.6.0 |
| Command: rm -rf FEAST.buildbin-libdir && mkdir FEAST.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FEAST_1.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FEAST.buildbin-libdir |
| StartedAt: 2023-04-18 15:44:22 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 15:45:39 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 76.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: FEAST_1.6.0.tgz |
| PackageFileSize: 4.533 MiB |
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### Running command:
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### rm -rf FEAST.buildbin-libdir && mkdir FEAST.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FEAST_1.6.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R FEAST.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FEAST.buildbin-libdir FEAST_1.6.0.tar.gz'
>>>>>>>
* installing *source* package ‘FEAST’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cal_3_metrics.c -o cal_3_metrics.o
cal_3_metrics.c:42:38: warning: variable 'nij_2' set but not used [-Wunused-but-set-variable]
double *nc, *nr, ni_2, n_j2, nt, nij_2;
^
cal_3_metrics.c:42:28: warning: variable 'n_j2' set but not used [-Wunused-but-set-variable]
double *nc, *nr, ni_2, n_j2, nt, nij_2;
^
cal_3_metrics.c:42:34: warning: variable 'nt' set but not used [-Wunused-but-set-variable]
double *nc, *nr, ni_2, n_j2, nt, nij_2;
^
cal_3_metrics.c:42:22: warning: variable 'ni_2' set but not used [-Wunused-but-set-variable]
double *nc, *nr, ni_2, n_j2, nt, nij_2;
^
4 warnings generated.
clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o FEAST.so cal_3_metrics.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
installing to /Volumes/External/bbs-3.16-bioc-m1/meat/FEAST.buildbin-libdir/00LOCK-FEAST/00new/FEAST/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FEAST)
>>>>>>>
>>>>>>> FIXING LINKS FOR FEAST.buildbin-libdir/FEAST/libs/FEAST.so
>>>>>>>
install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "FEAST.buildbin-libdir/FEAST/libs/FEAST.so"