Back to Mac ARM64 build report for BioC 3.16 |
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This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ChemmineOB package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 303/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
ChemmineOB 1.36.0 (landing page) Thomas Girke
| kjohnson | macOS 13.0 Ventura / arm64 | ERROR | ERROR | skipped | ||||||||
Package: ChemmineOB |
Version: 1.36.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineOB |
StartedAt: 2023-04-16 23:46:04 -0400 (Sun, 16 Apr 2023) |
EndedAt: 2023-04-16 23:46:10 -0400 (Sun, 16 Apr 2023) |
EllapsedTime: 6.5 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineOB ### ############################################################################## ############################################################################## * checking for file ‘ChemmineOB/DESCRIPTION’ ... OK * preparing ‘ChemmineOB’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes ----------------------------------- * installing *source* package ‘ChemmineOB’ ... ** using staged installation checking for pkg-config... /opt/homebrew/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for OPENBABEL... no checking for OPENBABEL... no checking for gcc... clang -arch arm64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch arm64 accepts -g... yes checking for clang -arch arm64 option to accept ISO C89... none needed checking how to run the C preprocessor... clang -arch arm64 -E configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/include/openbabel3 -I/usr/include/eigen3 -DUSE_BOOST -DHAVE_EIGEN -I/usr/local/include/eigen3 -I/usr/local/include/openbabel3 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChemmineOB.cpp -o ChemmineOB.o ChemmineOB.cpp:1569:10: fatal error: 'openbabel/obutil.h' file not found #include <openbabel/obutil.h> ^~~~~~~~~~~~~~~~~~~~ 1 error generated. make: *** [ChemmineOB.o] Error 1 ERROR: compilation failed for package ‘ChemmineOB’ * removing ‘/private/tmp/Rtmpr7HuRE/Rinst10c37769ae976/ChemmineOB’ ----------------------------------- ERROR: package installation failed