Neil Ari Wijetunga
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/SMITE |
| git_branch: master |
| git_last_commit: 80aaa0f |
| git_last_commit_date: 2021-11-21 00:55:42 -0400 (Sun, 21 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:44 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SMITE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SMITE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1830/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SMITE 1.23.1 (landing page) Neil Ari Wijetunga
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SMITE |
| Version: 1.23.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SMITE.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SMITE_1.23.1.tar.gz |
| StartedAt: 2022-03-17 20:19:44 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:23:34 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 230.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SMITE.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SMITE.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SMITE_1.23.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/SMITE.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SMITE/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SMITE' version '1.23.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SMITE' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SMITE.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SMITE
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SMITE' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SMITE'
finding HTML links ... done
Reactome.Symbol.Igraph html
SMITE-package html
addShadowText html
annotateExpression html
annotateModification html
convertGeneIds html
curated_expression html
extractExpression html
extractGOseq html
extractModification html
extractModules html
extractScores html
genes_for_conversiontest html
hg19_gene_bed html
highScores html
histone_h3k4me1 html
makePvalueAnnotation html
makePvalueObject html
methylationdata html
normalizePval html
plotCompareScores html
plotDensityPval html
plotModule html
removeModification html
runBioNet html
runGOseq html
runSpinglass html
scorePval html
stoufferTest html
test_annotation_score_data html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SMITE)
Making 'packages.html' ... done
SMITE.Rcheck/SMITE-Ex.timings
| name | user | system | elapsed | |
| Reactome.Symbol.Igraph | 0.09 | 0.01 | 0.11 | |
| SMITE-package | 0.27 | 0.03 | 0.29 | |
| addShadowText | 0 | 0 | 0 | |
| annotateExpression | 0.14 | 0.02 | 0.16 | |
| annotateModification | 0 | 0 | 0 | |
| convertGeneIds | 1.12 | 0.20 | 1.33 | |
| curated_expression | 0.03 | 0.00 | 0.03 | |
| extractExpression | 0.24 | 0.01 | 0.25 | |
| extractGOseq | 0.06 | 0.02 | 0.07 | |
| extractModification | 1.22 | 0.02 | 1.24 | |
| extractModules | 0.06 | 0.00 | 0.06 | |
| extractScores | 0.06 | 0.00 | 0.06 | |
| genes_for_conversiontest | 0.71 | 0.01 | 0.72 | |
| hg19_gene_bed | 0.09 | 0.02 | 0.11 | |
| highScores | 0.06 | 0.00 | 0.06 | |
| histone_h3k4me1 | 0.05 | 0.01 | 0.07 | |
| makePvalueAnnotation | 0.44 | 0.02 | 0.45 | |
| makePvalueObject | 0.05 | 0.00 | 0.05 | |
| methylationdata | 0.04 | 0.01 | 0.06 | |
| normalizePval | 0.10 | 0.00 | 0.09 | |
| plotCompareScores | 0.46 | 0.05 | 0.52 | |
| plotDensityPval | 0.13 | 0.02 | 0.14 | |
| plotModule | 0.09 | 0.00 | 0.09 | |
| removeModification | 0.07 | 0.00 | 0.07 | |
| runBioNet | 0.07 | 0.03 | 0.11 | |
| runGOseq | 0.10 | 0.00 | 0.09 | |
| runSpinglass | 0.40 | 0.00 | 0.41 | |
| scorePval | 0.08 | 0.00 | 0.08 | |
| stoufferTest | 0 | 0 | 0 | |
| test_annotation_score_data | 0.15 | 0.01 | 0.17 | |