Back to Build/check report for BioC 3.14 experimental data |
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This page was generated on 2022-04-13 14:50:25 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the yeastCC package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 403/408 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
yeastCC 1.34.0 (landing page) Sandrine Dudoit
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: yeastCC |
Version: 1.34.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:yeastCC.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings yeastCC_1.34.0.tar.gz |
StartedAt: 2022-04-13 11:55:38 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 11:56:00 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 22.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: yeastCC.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:yeastCC.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings yeastCC_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/yeastCC.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘yeastCC/DESCRIPTION’ ... OK * this is package ‘yeastCC’ version ‘1.34.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘yeastCC’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... WARNING Warning: large data file saved inefficiently: size ASCII compress spYCCmeta.rda 430Kb FALSE none Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress breeden.rda 1.9Mb 1.5Mb xz spYCCES.rda 757Kb 483Kb xz spYCCmeta.rda 430Kb 55Kb xz yeastCC.rda 1.5Mb 484Kb xz * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘CellCycle98.txt’, ‘CellCycle98.xls’, ‘KnownGenes.doc’, ‘KnownGenes.txt’, ‘Spellmanetal.pdf’, ‘consistentFHCRC.csv’, ‘createYeastCC.R’, ‘orf800.txt’ Package has no Sweave vignette sources and no VignetteBuilder field. * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE See ‘/home/biocbuild/bbs-3.14-data-experiment/meat/yeastCC.Rcheck/00check.log’ for details.
yeastCC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL yeastCC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘yeastCC’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yeastCC)
yeastCC.Rcheck/yeastCC-Ex.timings
name | user | system | elapsed | |
breeden | 0.079 | 0.016 | 0.095 | |
orf800 | 0.000 | 0.000 | 0.001 | |
spYCCmeta | 0.003 | 0.004 | 0.008 | |
yeastCC | 0.041 | 0.005 | 0.045 | |