Back to Build/check report for BioC 3.14 experimental data |
|
This page was generated on 2022-04-13 14:50:25 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SingleCellMultiModal package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 353/408 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
SingleCellMultiModal 1.6.0 (landing page) Marcel Ramos
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: SingleCellMultiModal |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.6.0.tar.gz |
StartedAt: 2022-04-13 11:49:23 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 11:52:35 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 191.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SingleCellMultiModal.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:SingleCellMultiModal.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings SingleCellMultiModal_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SingleCellMultiModal.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SingleCellMultiModal/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SingleCellMultiModal’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SingleCellMultiModal’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘BiocGenerics:::replaceSlots’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed CITEseq 10.917 0.800 12.399 SingleCellMultiModal 7.338 0.248 8.797 scNMT 5.405 0.084 6.337 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.14-data-experiment/meat/SingleCellMultiModal.Rcheck/00check.log’ for details.
SingleCellMultiModal.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL SingleCellMultiModal ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘SingleCellMultiModal’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SingleCellMultiModal)
SingleCellMultiModal.Rcheck/SingleCellMultiModal-Ex.timings
name | user | system | elapsed | |
CITEseq | 10.917 | 0.800 | 12.399 | |
GTseq | 1.649 | 0.076 | 2.032 | |
SCoPE2 | 2.020 | 0.035 | 2.455 | |
SingleCellMultiModal-package | 0.014 | 0.000 | 0.015 | |
SingleCellMultiModal | 7.338 | 0.248 | 8.797 | |
scMultiome | 2.304 | 0.084 | 2.852 | |
scNMT | 5.405 | 0.084 | 6.337 | |
scmmCache | 0.000 | 0.001 | 0.001 | |
seqFISH | 2.645 | 0.073 | 3.139 | |