Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:43 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the yeastGSData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 402/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
yeastGSData 0.30.0 (landing page) R. Gentleman
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: yeastGSData |
Version: 0.30.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings yeastGSData_0.30.0.tar.gz |
StartedAt: 2021-10-16 14:15:05 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 14:16:38 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 92.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: yeastGSData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:yeastGSData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings yeastGSData_0.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/yeastGSData.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘yeastGSData/DESCRIPTION’ ... OK * this is package ‘yeastGSData’ version ‘0.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘yeastGSData’ can be installed ... OK * checking installed package size ... NOTE installed size is 65.2Mb sub-directories of 1Mb or more: extdata 64.2Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... NOTE prepare_Rd: BayesFactorNGS.Rd:24-25: Dropping empty section \source prepare_Rd: BayesFactorNGS.Rd:26-27: Dropping empty section \references prepare_Rd: BayesFactorPGS.Rd:24-25: Dropping empty section \source prepare_Rd: BayesFactorPGS.Rd:26-27: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress BayesFactorNGS.rda 46Kb 18Kb xz BayesFactorPGS.rda 70Kb 32Kb xz MIPSGS.rda 15Kb 9Kb xz Mpact.rda 199Kb 136Kb bzip2 NEGGS.rda 600Kb 40Kb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 4 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/yeastGSData.Rcheck/00check.log’ for details.
yeastGSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL yeastGSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘yeastGSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yeastGSData)
yeastGSData.Rcheck/yeastGSData-Ex.timings
name | user | system | elapsed | |
BayesFactorNGS | 0.017 | 0.000 | 0.017 | |
BayesFactorPGS | 0.006 | 0.000 | 0.007 | |
BinaryGS | 0.002 | 0.000 | 0.002 | |
MIPSGS | 0.013 | 0.000 | 0.013 | |
Mpact | 0.044 | 0.000 | 0.043 | |
MpactEvidenceCodes | 0.001 | 0.000 | 0.001 | |
NEGGS | 3.193 | 0.084 | 3.276 | |
POSPS | 0.002 | 0.000 | 0.003 | |
PRS | 0.001 | 0.000 | 0.001 | |