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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).

CHECK results for geneLenDataBase on malbec2

To the developers/maintainers of the geneLenDataBase package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 144/406HostnameOS / ArchINSTALLBUILDCHECK
geneLenDataBase 1.28.0  (landing page)
Matthew Young , Nadia Davidson
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/geneLenDataBase
git_branch: RELEASE_3_13
git_last_commit: 7f14bbc
git_last_commit_date: 2021-05-19 11:30:35 -0400 (Wed, 19 May 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published

Summary

Package: geneLenDataBase
Version: 1.28.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings geneLenDataBase_1.28.0.tar.gz
StartedAt: 2021-10-16 13:15:37 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 13:24:32 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 535.2 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:geneLenDataBase.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings geneLenDataBase_1.28.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .git_fetch_output.txt
  .git_merge_output.txt
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.



Installation output

geneLenDataBase.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL geneLenDataBase
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘geneLenDataBase’ ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geneLenDataBase)

Tests output


Example timings

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0730.0000.072
anoCar1.genscan.LENGTH0.0480.0000.048
anoCar1.xenoRefGene.LENGTH0.8540.0040.859
anoGam1.ensGene.LENGTH0.0590.0000.060
anoGam1.geneid.LENGTH0.0400.0040.044
anoGam1.genscan.LENGTH0.0380.0040.042
apiMel1.genscan.LENGTH0.0360.0000.036
apiMel2.ensGene.LENGTH0.0810.0040.086
apiMel2.geneid.LENGTH0.0980.0120.111
apiMel2.genscan.LENGTH0.0320.0000.032
aplCal1.xenoRefGene.LENGTH0.4000.0040.403
bosTau2.geneSymbol.LENGTH0.040.000.04
bosTau2.geneid.LENGTH0.2370.0040.242
bosTau2.genscan.LENGTH0.0780.0000.079
bosTau2.refGene.LENGTH0.0380.0000.039
bosTau2.sgpGene.LENGTH0.0950.0040.099
bosTau3.ensGene.LENGTH0.1270.0000.127
bosTau3.geneSymbol.LENGTH0.0300.0040.034
bosTau3.geneid.LENGTH0.1160.0000.115
bosTau3.genscan.LENGTH0.0760.0000.076
bosTau3.refGene.LENGTH0.0330.0000.034
bosTau3.sgpGene.LENGTH0.0880.0040.092
bosTau4.ensGene.LENGTH0.1060.0000.106
bosTau4.geneSymbol.LENGTH0.0320.0000.033
bosTau4.genscan.LENGTH0.0600.0040.064
bosTau4.nscanGene.LENGTH0.0280.0000.028
bosTau4.refGene.LENGTH0.0330.0000.033
braFlo1.xenoRefGene.LENGTH0.4170.0000.416
caeJap1.xenoRefGene.LENGTH0.3560.0000.356
caePb1.xenoRefGene.LENGTH0.4680.0000.469
caePb2.xenoRefGene.LENGTH0.5580.0040.562
caeRem2.xenoRefGene.LENGTH0.3520.0040.356
caeRem3.xenoRefGene.LENGTH0.3180.0040.322
calJac1.genscan.LENGTH0.0880.0000.088
calJac1.nscanGene.LENGTH0.1020.0030.105
calJac1.xenoRefGene.LENGTH0.8090.0040.813
canFam1.ensGene.LENGTH0.2420.0000.241
canFam1.geneSymbol.LENGTH0.0050.0000.005
canFam1.genscan.LENGTH0.0560.0000.056
canFam1.nscanGene.LENGTH0.0580.0000.058
canFam1.refGene.LENGTH0.0050.0000.005
canFam1.xenoRefGene.LENGTH0.5540.0000.553
canFam2.ensGene.LENGTH0.0880.0000.088
canFam2.geneSymbol.LENGTH0.0050.0000.006
canFam2.genscan.LENGTH0.0570.0000.058
canFam2.nscanGene.LENGTH0.0610.0000.062
canFam2.refGene.LENGTH0.0050.0000.006
canFam2.xenoRefGene.LENGTH0.5770.0000.577
cavPor3.ensGene.LENGTH0.0840.0040.088
cavPor3.genscan.LENGTH0.0980.0000.098
cavPor3.nscanGene.LENGTH0.0670.0000.068
cavPor3.xenoRefGene.LENGTH0.60.00.6
cb1.xenoRefGene.LENGTH0.5150.0000.516
cb3.xenoRefGene.LENGTH0.3150.0000.315
ce2.geneSymbol.LENGTH0.0670.0000.067
ce2.geneid.LENGTH0.0560.0000.056
ce2.refGene.LENGTH0.0660.0000.066
ce4.geneSymbol.LENGTH0.0660.0020.068
ce4.refGene.LENGTH0.0580.0020.060
ce4.xenoRefGene.LENGTH0.0770.0000.076
ce6.ensGene.LENGTH0.0880.0000.088
ce6.geneSymbol.LENGTH0.0630.0000.064
ce6.refGene.LENGTH0.0660.0000.067
ce6.xenoRefGene.LENGTH0.0790.0000.079
ci1.geneSymbol.LENGTH0.0050.0000.005
ci1.refGene.LENGTH0.0010.0040.005
ci1.xenoRefGene.LENGTH0.1950.0000.194
ci2.ensGene.LENGTH0.070.000.07
ci2.geneSymbol.LENGTH0.0050.0000.005
ci2.refGene.LENGTH0.0050.0000.004
ci2.xenoRefGene.LENGTH0.3520.0000.352
danRer3.ensGene.LENGTH0.120.000.12
danRer3.geneSymbol.LENGTH0.0570.0000.056
danRer3.refGene.LENGTH0.0530.0000.052
danRer4.ensGene.LENGTH0.2820.0000.282
danRer4.geneSymbol.LENGTH0.0560.0000.057
danRer4.genscan.LENGTH0.0630.0000.064
danRer4.nscanGene.LENGTH0.0900.0040.094
danRer4.refGene.LENGTH0.0510.0000.051
danRer5.ensGene.LENGTH0.2400.0040.244
danRer5.geneSymbol.LENGTH0.0480.0000.048
danRer5.refGene.LENGTH0.0450.0000.045
danRer5.vegaGene.LENGTH0.0460.0040.049
danRer5.vegaPseudoGene.LENGTH0.0030.0000.003
danRer6.ensGene.LENGTH0.150.000.15
danRer6.geneSymbol.LENGTH0.0550.0000.054
danRer6.refGene.LENGTH0.0460.0000.046
danRer6.xenoRefGene.LENGTH0.5890.0000.589
dm1.geneSymbol.LENGTH0.8280.0000.827
dm1.genscan.LENGTH0.0230.0000.023
dm1.refGene.LENGTH0.0600.0000.061
dm2.geneSymbol.LENGTH0.0610.0000.062
dm2.geneid.LENGTH0.0320.0000.032
dm2.genscan.LENGTH0.0230.0000.022
dm2.nscanGene.LENGTH0.0450.0000.045
dm2.refGene.LENGTH0.0570.0000.057
dm3.geneSymbol.LENGTH0.0640.0000.063
dm3.nscanPasaGene.LENGTH0.0520.0000.051
dm3.refGene.LENGTH0.0620.0000.061
dp2.genscan.LENGTH0.0300.0000.029
dp2.xenoRefGene.LENGTH0.2460.0000.245
dp3.geneid.LENGTH0.0370.0000.037
dp3.genscan.LENGTH0.0240.0000.025
dp3.xenoRefGene.LENGTH0.1190.0000.119
droAna1.geneid.LENGTH0.0620.0000.062
droAna1.genscan.LENGTH0.0220.0000.023
droAna1.xenoRefGene.LENGTH0.2430.0000.244
droAna2.genscan.LENGTH0.0450.0000.045
droAna2.xenoRefGene.LENGTH0.3290.0000.328
droEre1.genscan.LENGTH0.0280.0000.028
droEre1.xenoRefGene.LENGTH0.2890.0000.289
droGri1.genscan.LENGTH0.0370.0020.038
droGri1.xenoRefGene.LENGTH0.2860.0020.289
droMoj1.geneid.LENGTH0.1090.0000.110
droMoj1.genscan.LENGTH0.0450.0040.050
droMoj1.xenoRefGene.LENGTH0.2520.0000.252
droMoj2.genscan.LENGTH0.0350.0000.034
droMoj2.xenoRefGene.LENGTH0.2870.0000.287
droPer1.genscan.LENGTH0.0370.0000.038
droPer1.xenoRefGene.LENGTH0.3120.0040.315
droSec1.genscan.LENGTH0.0290.0000.028
droSec1.xenoRefGene.LENGTH0.2600.0000.259
droSim1.geneid.LENGTH0.0330.0040.037
droSim1.genscan.LENGTH0.0240.0000.025
droSim1.xenoRefGene.LENGTH0.2410.0000.242
droVir1.geneid.LENGTH0.0950.0040.100
droVir1.genscan.LENGTH0.0420.0000.042
droVir1.xenoRefGene.LENGTH0.2730.0000.273
droVir2.genscan.LENGTH0.0350.0000.035
droVir2.xenoRefGene.LENGTH0.3330.0040.337
droYak1.geneid.LENGTH0.1520.0000.152
droYak1.genscan.LENGTH0.0290.0000.029
droYak1.xenoRefGene.LENGTH0.2330.0000.232
droYak2.genscan.LENGTH0.0290.0000.028
droYak2.xenoRefGene.LENGTH0.320.000.32
equCab1.geneSymbol.LENGTH0.0050.0000.004
equCab1.geneid.LENGTH0.0820.0000.082
equCab1.nscanGene.LENGTH0.0410.0000.041
equCab1.refGene.LENGTH0.0040.0000.005
equCab1.sgpGene.LENGTH0.0670.0000.066
equCab2.ensGene.LENGTH0.1070.0000.107
equCab2.geneSymbol.LENGTH0.0060.0000.006
equCab2.nscanGene.LENGTH0.0510.0000.051
equCab2.refGene.LENGTH0.0060.0000.006
equCab2.xenoRefGene.LENGTH0.5820.0030.586
felCat3.ensGene.LENGTH0.1250.0000.125
felCat3.geneSymbol.LENGTH0.0040.0000.003
felCat3.geneid.LENGTH0.5090.0040.513
felCat3.genscan.LENGTH0.1210.0000.122
felCat3.nscanGene.LENGTH0.0920.0060.097
felCat3.refGene.LENGTH0.0020.0020.004
felCat3.sgpGene.LENGTH0.1410.0000.141
felCat3.xenoRefGene.LENGTH1.3420.0041.346
fr1.ensGene.LENGTH0.1090.0000.109
fr1.genscan.LENGTH0.0660.0000.067
fr2.ensGene.LENGTH0.1420.0000.142
galGal2.ensGene.LENGTH0.0620.0000.062
galGal2.geneSymbol.LENGTH0.0180.0000.018
galGal2.geneid.LENGTH0.0450.0000.045
galGal2.genscan.LENGTH0.060.000.06
galGal2.refGene.LENGTH0.0160.0020.017
galGal2.sgpGene.LENGTH0.0490.0020.051
galGal3.ensGene.LENGTH0.0940.0000.094
galGal3.geneSymbol.LENGTH0.0140.0040.019
galGal3.genscan.LENGTH0.0550.0000.055
galGal3.nscanGene.LENGTH0.0780.0000.077
galGal3.refGene.LENGTH0.0160.0000.015
galGal3.xenoRefGene.LENGTH0.5360.0000.536
gasAcu1.ensGene.LENGTH0.1010.0000.101
gasAcu1.nscanGene.LENGTH0.410.000.41
hg16.acembly.LENGTH0.3110.0020.312
hg16.ensGene.LENGTH0.0670.0020.069
hg16.exoniphy.LENGTH0.2050.0000.205
hg16.geneSymbol.LENGTH0.0880.0000.089
hg16.geneid.LENGTH0.0430.0030.046
hg16.genscan.LENGTH0.0520.0040.056
hg16.knownGene.LENGTH0.0980.0040.102
hg16.refGene.LENGTH0.0850.0000.086
hg16.sgpGene.LENGTH0.0460.0040.050
hg17.acembly.LENGTH0.3980.0000.398
hg17.acescan.LENGTH0.0100.0000.009
hg17.ccdsGene.LENGTH0.0210.0000.020
hg17.ensGene.LENGTH0.1160.0000.115
hg17.exoniphy.LENGTH0.3760.0000.375
hg17.geneSymbol.LENGTH0.0870.0000.087
hg17.geneid.LENGTH0.0630.0000.062
hg17.genscan.LENGTH0.0540.0000.054
hg17.knownGene.LENGTH0.0980.0000.098
hg17.refGene.LENGTH0.0830.0040.088
hg17.sgpGene.LENGTH0.0620.0040.065
hg17.vegaGene.LENGTH0.0380.0000.038
hg17.vegaPseudoGene.LENGTH0.0160.0000.015
hg17.xenoRefGene.LENGTH0.2310.0000.231
hg18.acembly.LENGTH0.4770.0040.482
hg18.acescan.LENGTH0.0090.0000.010
hg18.ccdsGene.LENGTH0.0310.0000.032
hg18.ensGene.LENGTH0.1770.0040.180
hg18.exoniphy.LENGTH0.4090.0000.409
hg18.geneSymbol.LENGTH0.0970.0000.097
hg18.geneid.LENGTH0.0730.0000.072
hg18.genscan.LENGTH0.0590.0020.060
hg18.knownGene.LENGTH0.1560.0020.158
hg18.knownGeneOld3.LENGTH0.0670.0040.070
hg18.refGene.LENGTH0.1080.0000.108
hg18.sgpGene.LENGTH0.0710.0000.070
hg18.sibGene.LENGTH0.5150.0000.514
hg18.xenoRefGene.LENGTH0.3330.0000.333
hg19.ccdsGene.LENGTH0.0410.0000.040
hg19.ensGene.LENGTH0.3410.0000.340
hg19.exoniphy.LENGTH0.3810.0000.380
hg19.geneSymbol.LENGTH0.090.000.09
hg19.knownGene.LENGTH0.9920.0040.997
hg19.nscanGene.LENGTH0.1280.0000.129
hg19.refGene.LENGTH0.0870.0000.088
hg19.xenoRefGene.LENGTH0.3520.0000.352
loxAfr3.xenoRefGene.LENGTH0.6940.0000.693
mm7.ensGene.LENGTH0.1100.0020.111
mm7.geneSymbol.LENGTH0.0790.0020.081
mm7.geneid.LENGTH0.0710.0000.071
mm7.genscan.LENGTH0.0580.0000.057
mm7.knownGene.LENGTH0.1030.0000.103
mm7.refGene.LENGTH0.0710.0000.071
mm7.sgpGene.LENGTH0.0670.0000.067
mm7.xenoRefGene.LENGTH0.2480.0000.248
mm8.ccdsGene.LENGTH0.0200.0000.021
mm8.ensGene.LENGTH0.0650.0040.069
mm8.geneSymbol.LENGTH0.0780.0000.077
mm8.geneid.LENGTH0.0680.0000.068
mm8.genscan.LENGTH0.0510.0040.054
mm8.knownGene.LENGTH0.0830.0000.083
mm8.nscanGene.LENGTH0.0560.0000.056
mm8.refGene.LENGTH0.0710.0000.071
mm8.sgpGene.LENGTH0.0650.0000.066
mm8.sibGene.LENGTH0.2090.0040.214
mm8.xenoRefGene.LENGTH0.3130.0000.313
mm9.acembly.LENGTH0.3120.0000.312
mm9.ccdsGene.LENGTH0.0240.0040.028
mm9.ensGene.LENGTH0.1370.0040.141
mm9.exoniphy.LENGTH0.3710.0080.378
mm9.geneSymbol.LENGTH0.0790.0000.079
mm9.geneid.LENGTH0.0760.0000.077
mm9.genscan.LENGTH0.0590.0000.060
mm9.knownGene.LENGTH0.0940.0000.095
mm9.nscanGene.LENGTH0.0570.0000.058
mm9.refGene.LENGTH0.0770.0000.078
mm9.sgpGene.LENGTH0.0780.0000.078
mm9.xenoRefGene.LENGTH0.4600.0000.461
monDom1.genscan.LENGTH0.0650.0000.066
monDom4.ensGene.LENGTH0.0760.0040.080
monDom4.geneSymbol.LENGTH0.0030.0000.003
monDom4.genscan.LENGTH0.0500.0000.049
monDom4.nscanGene.LENGTH0.0510.0000.051
monDom4.refGene.LENGTH0.0000.0040.004
monDom4.xenoRefGene.LENGTH0.3670.0080.375
monDom5.ensGene.LENGTH0.1070.0040.111
monDom5.geneSymbol.LENGTH0.0040.0000.003
monDom5.genscan.LENGTH0.0530.0000.052
monDom5.nscanGene.LENGTH0.3530.0000.352
monDom5.refGene.LENGTH0.0040.0000.003
monDom5.xenoRefGene.LENGTH0.6430.0000.643
ornAna1.ensGene.LENGTH0.1290.0000.128
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0030.0000.002
ornAna1.xenoRefGene.LENGTH0.5730.0070.581
oryLat2.ensGene.LENGTH0.0750.0000.075
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0030.0000.004
oryLat2.xenoRefGene.LENGTH0.5430.0000.542
panTro1.ensGene.LENGTH0.1030.0000.103
panTro1.geneid.LENGTH0.0540.0000.054
panTro1.genscan.LENGTH0.0610.0000.062
panTro1.xenoRefGene.LENGTH0.1230.0000.123
panTro2.ensGene.LENGTH0.1170.0000.117
panTro2.geneSymbol.LENGTH0.10.00.1
panTro2.genscan.LENGTH0.0580.0000.057
panTro2.nscanGene.LENGTH0.0620.0000.061
panTro2.refGene.LENGTH0.1010.0000.100
panTro2.xenoRefGene.LENGTH0.4540.0080.461
petMar1.xenoRefGene.LENGTH0.2560.0000.255
ponAbe2.ensGene.LENGTH0.0830.0000.083
ponAbe2.geneSymbol.LENGTH0.0130.0000.012
ponAbe2.genscan.LENGTH0.0560.0040.060
ponAbe2.nscanGene.LENGTH0.0550.0040.060
ponAbe2.refGene.LENGTH0.0110.0000.012
ponAbe2.xenoRefGene.LENGTH0.6800.0040.683
priPac1.xenoRefGene.LENGTH0.3500.0000.349
rheMac2.ensGene.LENGTH0.140.000.14
rheMac2.geneSymbol.LENGTH0.0050.0000.005
rheMac2.geneid.LENGTH0.0710.0040.075
rheMac2.nscanGene.LENGTH0.0610.0000.060
rheMac2.refGene.LENGTH0.0050.0000.005
rheMac2.sgpGene.LENGTH0.070.000.07
rheMac2.xenoRefGene.LENGTH0.5290.0000.529
rn3.ensGene.LENGTH0.2940.0040.298
rn3.geneSymbol.LENGTH0.0530.0000.054
rn3.geneid.LENGTH0.0500.0000.051
rn3.genscan.LENGTH0.060.000.06
rn3.knownGene.LENGTH0.0230.0000.022
rn3.nscanGene.LENGTH0.060.000.06
rn3.refGene.LENGTH0.0510.0000.051
rn3.sgpGene.LENGTH0.0590.0000.059
rn3.xenoRefGene.LENGTH0.6350.0000.634
rn4.ensGene.LENGTH0.1760.0000.175
rn4.geneSymbol.LENGTH0.0490.0040.053
rn4.geneid.LENGTH0.0810.0000.082
rn4.genscan.LENGTH0.0600.0000.059
rn4.knownGene.LENGTH0.0240.0000.024
rn4.nscanGene.LENGTH0.0500.0040.055
rn4.refGene.LENGTH0.0520.0000.052
rn4.sgpGene.LENGTH0.1180.0000.118
rn4.xenoRefGene.LENGTH0.3420.0000.341
sacCer1.ensGene.LENGTH0.0180.0000.017
sacCer2.ensGene.LENGTH0.0170.0000.016
strPur1.geneSymbol.LENGTH0.0050.0000.004
strPur1.genscan.LENGTH0.0630.0000.063
strPur1.refGene.LENGTH0.0050.0000.004
strPur1.xenoRefGene.LENGTH0.5790.0000.578
strPur2.geneSymbol.LENGTH0.0040.0000.004
strPur2.genscan.LENGTH0.1060.0000.106
strPur2.refGene.LENGTH0.0040.0000.004
strPur2.xenoRefGene.LENGTH0.6440.0000.645
supportedGeneIDs0.1210.0093.447
supportedGenomes0.4420.0081.125
taeGut1.ensGene.LENGTH0.0780.0000.078
taeGut1.geneSymbol.LENGTH0.0030.0000.003
taeGut1.genscan.LENGTH0.0380.0000.038
taeGut1.nscanGene.LENGTH0.0290.0000.030
taeGut1.refGene.LENGTH0.0020.0000.003
taeGut1.xenoRefGene.LENGTH0.5280.0000.529
tetNig1.ensGene.LENGTH0.0950.0000.095
tetNig1.geneid.LENGTH0.0690.0000.069
tetNig1.genscan.LENGTH0.0540.0000.054
tetNig1.nscanGene.LENGTH0.0720.0000.073
tetNig2.ensGene.LENGTH0.0670.0040.072
unfactor0.0030.0000.004
xenTro1.genscan.LENGTH0.0870.0040.090
xenTro2.ensGene.LENGTH0.1070.0000.106
xenTro2.geneSymbol.LENGTH0.0330.0000.033
xenTro2.genscan.LENGTH0.0780.0000.077
xenTro2.refGene.LENGTH0.0330.0000.033