Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the ecoliLeucine package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 112/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ecoliLeucine 1.32.0 (landing page) Laurent Gautier
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: ecoliLeucine |
Version: 1.32.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ecoliLeucine.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ecoliLeucine_1.32.0.tar.gz |
StartedAt: 2021-10-16 13:08:12 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:09:03 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 50.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ecoliLeucine.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:ecoliLeucine.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings ecoliLeucine_1.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/ecoliLeucine.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ecoliLeucine/DESCRIPTION’ ... OK * this is package ‘ecoliLeucine’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ecoliLeucine’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: data 6.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress ecoliLeucine.rda 6.7Mb 4.5Mb xz * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/ecoliLeucine.Rcheck/00check.log’ for details.
ecoliLeucine.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL ecoliLeucine ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘ecoliLeucine’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘AnnotationDbi::tail’ by ‘utils::tail’ when loading ‘ecolicdf’ Warning: replacing previous import ‘AnnotationDbi::head’ by ‘utils::head’ when loading ‘ecolicdf’ ** testing if installed package can be loaded from final location Warning: replacing previous import ‘AnnotationDbi::tail’ by ‘utils::tail’ when loading ‘ecolicdf’ Warning: replacing previous import ‘AnnotationDbi::head’ by ‘utils::head’ when loading ‘ecolicdf’ ** testing if installed package keeps a record of temporary installation path * DONE (ecoliLeucine)