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This page was generated on 2021-10-16 15:58:42 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the PREDAsampledata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 284/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
PREDAsampledata 0.32.0 (landing page) Francesco Ferrari
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: PREDAsampledata |
Version: 0.32.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PREDAsampledata_0.32.0.tar.gz |
StartedAt: 2021-10-16 13:45:55 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:48:13 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 137.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: PREDAsampledata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PREDAsampledata_0.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/PREDAsampledata.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK * this is package ‘PREDAsampledata’ version ‘0.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘PREDAsampledata’ can be installed ... OK * checking installed package size ... NOTE installed size is 80.4Mb sub-directories of 1Mb or more: data 59.6Mb sampledata 20.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Biobase’ ‘PREDA’ ‘affy’ ‘annotate’ ‘methods’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed AffybatchRCC 6.03 0.192 6.26 * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/PREDAsampledata.Rcheck/00check.log’ for details.
PREDAsampledata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL PREDAsampledata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘PREDAsampledata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PREDAsampledata)
PREDAsampledata.Rcheck/PREDAsampledata-Ex.timings
name | user | system | elapsed | |
AffybatchRCC | 6.030 | 0.192 | 6.260 | |
ExpressionSetRCC | 0.834 | 0.012 | 0.846 | |
GEanalysisResults | 0.218 | 0.004 | 0.222 | |
SODEGIRCNDataForPREDA | 0.928 | 0.016 | 0.943 | |
SODEGIRCNanalysisResults | 0.315 | 0.012 | 0.326 | |
SODEGIRGEDataForPREDA | 0.299 | 0.004 | 0.303 | |
SODEGIRGEanalysisResults | 1.165 | 0.012 | 1.177 | |