Back to Build/check report for BioC 3.13 experimental data |
|
This page was generated on 2021-10-16 15:58:42 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the MUGAExampleData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 255/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
MUGAExampleData 1.12.0 (landing page) Daniel Gatti
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: MUGAExampleData |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MUGAExampleData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MUGAExampleData_1.12.0.tar.gz |
StartedAt: 2021-10-16 13:39:01 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:39:37 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 36.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MUGAExampleData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:MUGAExampleData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings MUGAExampleData_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MUGAExampleData.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MUGAExampleData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MUGAExampleData’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MUGAExampleData’ can be installed ... OK * checking installed package size ... NOTE installed size is 88.6Mb sub-directories of 1Mb or more: data 88.5Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/MUGAExampleData.Rcheck/00check.log’ for details.
MUGAExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL MUGAExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘MUGAExampleData’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MUGAExampleData)
MUGAExampleData.Rcheck/MUGAExampleData-Ex.timings
name | user | system | elapsed | |
FinalReport1 | 2.297 | 0.068 | 2.365 | |
FinalReport2 | 1.254 | 0.016 | 1.270 | |
MUGAExampleData-package | 2.447 | 0.020 | 2.467 | |
Samples1 | 0.001 | 0.000 | 0.001 | |
Samples2 | 0.001 | 0.000 | 0.001 | |
call.rate.batch | 0.001 | 0.000 | 0.001 | |
geno | 0.724 | 0.004 | 0.728 | |
model.probs | 0.759 | 0.036 | 0.794 | |
pheno | 0.005 | 0.000 | 0.005 | |
x | 0.076 | 0.000 | 0.077 | |
y | 0.076 | 0.004 | 0.080 | |