Back to Build/check report for BioC 3.13 experimental data |
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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the GenomicDistributionsData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 146/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GenomicDistributionsData 1.0.0 (landing page) Kristyna Kupkova
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: GenomicDistributionsData |
Version: 1.0.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.0.0.tar.gz |
StartedAt: 2021-10-16 13:16:00 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:20:49 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 288.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GenomicDistributionsData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:GenomicDistributionsData.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings GenomicDistributionsData_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/GenomicDistributionsData.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GenomicDistributionsData/DESCRIPTION’ ... OK * this is package ‘GenomicDistributionsData’ version ‘1.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .travis.yml These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GenomicDistributionsData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/GenomicDistributionsData.Rcheck/00check.log’ for details.
GenomicDistributionsData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL GenomicDistributionsData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘GenomicDistributionsData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2021-05-18 ** testing if installed package can be loaded from final location snapshotDate(): 2021-05-18 ** testing if installed package keeps a record of temporary installation path * DONE (GenomicDistributionsData)
GenomicDistributionsData.Rcheck/GenomicDistributionsData-Ex.timings
name | user | system | elapsed | |
GenomicDistributionsData | 0 | 0 | 0 | |
TSS_hg19 | 3.931 | 0.160 | 4.375 | |
TSS_hg38 | 2.216 | 0.029 | 2.448 | |
TSS_mm10 | 2.210 | 0.007 | 2.409 | |
TSS_mm9 | 2.169 | 0.012 | 2.371 | |
buildChromSizes | 0 | 0 | 0 | |
buildGeneModels | 0 | 0 | 0 | |
buildOpenSignalMatrix | 0 | 0 | 0 | |
buildTSS | 0 | 0 | 0 | |
chromSizes_hg19 | 2.093 | 0.025 | 2.340 | |
chromSizes_hg38 | 2.080 | 0.008 | 2.303 | |
chromSizes_mm10 | 1.974 | 0.020 | 2.178 | |
chromSizes_mm9 | 2.022 | 0.016 | 2.238 | |
geneModels_hg19 | 2.309 | 0.012 | 2.572 | |
geneModels_hg38 | 2.357 | 0.024 | 2.604 | |
geneModels_mm10 | 2.345 | 0.016 | 2.558 | |
geneModels_mm9 | 2.568 | 0.016 | 2.787 | |
loadBSgenome | 0 | 0 | 0 | |
loadEnsDb | 0 | 0 | 0 | |
loadTxDb | 0.000 | 0.000 | 0.001 | |
openSignalMatrix_hg19 | 0 | 0 | 0 | |
openSignalMatrix_hg38 | 0.000 | 0.000 | 0.001 | |
openSignalMatrix_mm10 | 0 | 0 | 0 | |