Back to Build/check report for BioC 3.12 experimental data |
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This page was generated on 2021-05-06 14:10:06 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the brgedata package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 41/398 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
brgedata 1.12.0 (landing page) Carlos Ruiz-Arenas
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: brgedata |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings brgedata_1.12.0.tar.gz |
StartedAt: 2021-05-06 11:40:11 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 11:44:27 -0400 (Thu, 06 May 2021) |
EllapsedTime: 255.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: brgedata.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:brgedata.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings brgedata_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.12-data-experiment/meat/brgedata.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘brgedata/DESCRIPTION’ ... OK * this is package ‘brgedata’ version ‘1.12.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘brgedata’ can be installed ... OK * checking installed package size ... NOTE installed size is 638.3Mb sub-directories of 1Mb or more: data 184.2Mb extdata 454.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Warning: found non-ASCII strings 'Average Brominated THM uptake (<b5>g/day)' in object 'brge_expo' 'Average Chloroform uptake (<b5>g/day)' in object 'brge_expo' 'Average total THM uptake (<b5>g/day)' in object 'brge_expo' 'Benzene levels (<b5>g/m3)' in object 'brge_expo' 'BPA (<b5>g/g creatine)' in object 'brge_expo' 'Mercury (<b5>g/l)' in object 'brge_expo' 'NO2 levels (<b5>g/m3)' in object 'brge_expo' 'PFBS (<b5>g/l)' in object 'brge_expo' 'PFHxS (<b5>g/l)' in object 'brge_expo' 'PFOA (<b5>g/l)' in object 'brge_expo' '<b5>g/l' in object 'brge_expo' * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed brge_methy 12.56 0.616 15.968 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.12-data-experiment/meat/brgedata.Rcheck/00check.log’ for details.
brgedata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL brgedata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘brgedata’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brgedata)
brgedata.Rcheck/brgedata-Ex.timings
name | user | system | elapsed | |
brge_gexp | 2.008 | 0.076 | 2.085 | |
brge_methy | 12.560 | 0.616 | 15.968 | |
brge_prot | 0.004 | 0.000 | 0.003 | |