Back to Long Tests report for BioC 3.12 |
This page was generated on 2021-05-08 14:20:33 -0400 (Sat, 08 May 2021).
To the developers/maintainers of the cBioPortalData package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 3/10 | Hostname | OS / Arch | CHECK | |||||||
cBioPortalData 2.2.11 (landing page) Marcel Ramos
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | WARNINGS | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | WARNINGS | ||||||||
Package: cBioPortalData |
Version: 2.2.11 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.2.11.tar.gz |
StartedAt: 2021-05-08 09:31:26 -0400 (Sat, 08 May 2021) |
EndedAt: 2021-05-08 09:35:13 -0400 (Sat, 08 May 2021) |
EllapsedTime: 227.3 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: cBioPortalData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.2.11.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc-longtests/meat/cBioPortalData.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’ * checking for file ‘cBioPortalData/DESCRIPTION’ ... OK * this is package ‘cBioPortalData’ version ‘2.2.11’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cBioPortalData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... SKIPPED * checking examples ... SKIPPED WARNING directory ‘longtests’ not found * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.12-bioc-longtests/meat/cBioPortalData.Rcheck/00check.log’ for details.
cBioPortalData.Rcheck/00install.out
* installing *source* package ‘cBioPortalData’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cBioPortalData)