Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:18 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the miRspongeR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1117/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
miRspongeR 1.16.2 (landing page) Junpeng Zhang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: miRspongeR |
Version: 1.16.2 |
Command: rm -rf miRspongeR.buildbin-libdir && mkdir miRspongeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=miRspongeR.buildbin-libdir miRspongeR_1.16.2.tar.gz |
StartedAt: 2021-05-06 09:32:54 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 09:33:28 -0400 (Thu, 06 May 2021) |
EllapsedTime: 34.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: miRspongeR_1.16.2.zip |
PackageFileSize: 685.9 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf miRspongeR.buildbin-libdir && mkdir miRspongeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=miRspongeR.buildbin-libdir miRspongeR_1.16.2.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'miRspongeR' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c complex.c -o complex.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o miRspongeR.dll tmp.def complex.o registerDynamicSymbol.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/miRspongeR.buildbin-libdir/00LOCK-miRspongeR/00new/miRspongeR/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'miRspongeR' finding HTML links ... done integrateMethod html moduleDEA html moduleFEA html moduleSurvival html netModule html querymiRTargetbinding html spongeMethod html spongeValidate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'miRspongeR' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c complex.c -o complex.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/biocbuild/bbs-3.12-bioc/R/library/zlibbioc/include" -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DHAVE_ZLIB -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file sh: -c: line 0: unexpected EOF while looking for matching `"' sh: -c: line 1: syntax error: unexpected end of file C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o miRspongeR.dll tmp.def complex.o registerDynamicSymbol.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/miRspongeR.buildbin-libdir/miRspongeR/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'miRspongeR' as miRspongeR_1.16.2.zip * DONE (miRspongeR)