Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:38 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the SIMD package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1715/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SIMD 1.8.0 (landing page) Jiadi Zhu
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SIMD |
Version: 1.8.0 |
Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SIMD_1.8.0.tar.gz && rm -rf SIMD.buildbin-libdir && mkdir SIMD.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIMD.buildbin-libdir SIMD_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SIMD_1.8.0.zip && rm SIMD_1.8.0.tar.gz SIMD_1.8.0.zip |
StartedAt: 2021-05-05 16:57:26 -0400 (Wed, 05 May 2021) |
EndedAt: 2021-05-05 16:57:48 -0400 (Wed, 05 May 2021) |
EllapsedTime: 22.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/SIMD_1.8.0.tar.gz && rm -rf SIMD.buildbin-libdir && mkdir SIMD.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SIMD.buildbin-libdir SIMD_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL SIMD_1.8.0.zip && rm SIMD_1.8.0.tar.gz SIMD_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 93644 100 93644 0 0 4798k 0 --:--:-- --:--:-- --:--:-- 5080k install for i386 * installing *source* package 'SIMD' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pvalueclassify.c -o pvalueclassify.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o SIMD.dll tmp.def init.o pvalueclassify.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/SIMD.buildbin-libdir/00LOCK-SIMD/00new/SIMD/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SIMD' finding HTML links ... done EM2_H1ESB1_MeDIP_sigleCpG html EM2_H1ESB2_MeDIP_sigleCpG html EM_H1ESB1_MeDIP_sigleCpG html EMalgorithm html EMtest html H1ESB1_MRE_sigleCpG html H1ESB2_MRE_sigleCpG html SIMD-package html all_CpGsite_bin_chr18 html classifypvalue html emalgth html emalgth1 html probBinom html three_mre_cpg html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SIMD' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pvalueclassify.c -o pvalueclassify.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o SIMD.dll tmp.def init.o pvalueclassify.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/SIMD.buildbin-libdir/SIMD/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'SIMD' as SIMD_1.8.0.zip * DONE (SIMD) * installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library' package 'SIMD' successfully unpacked and MD5 sums checked