Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:45 -0400 (Thu, 06 May 2021).
To the developers/maintainers of the SELEX package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1670/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SELEX 1.22.0 (landing page) Harmen J. Bussemaker
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SELEX |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.22.0.tar.gz |
StartedAt: 2021-05-06 06:05:30 -0400 (Thu, 06 May 2021) |
EndedAt: 2021-05-06 06:07:31 -0400 (Thu, 06 May 2021) |
EllapsedTime: 120.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/SELEX.Rcheck’ * using R version 4.0.5 (2021-03-31) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SELEX/DESCRIPTION’ ... OK * this is package ‘SELEX’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SELEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SELEX 28.616 3.196 10.714 selex.seqfilter 13.477 1.437 4.332 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.12-bioc/meat/SELEX.Rcheck/00check.log’ for details.
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
name | user | system | elapsed | |
SELEX | 28.616 | 3.196 | 10.714 | |
selex.affinities | 0.997 | 0.040 | 0.381 | |
selex.config | 0.216 | 0.010 | 0.056 | |
selex.countSummary | 1.329 | 0.067 | 0.487 | |
selex.counts | 1.649 | 0.058 | 0.640 | |
selex.defineSample | 0.108 | 0.012 | 0.062 | |
selex.exampledata | 0.059 | 0.010 | 0.047 | |
selex.fastqPSFM | 0.583 | 0.041 | 0.326 | |
selex.getAttributes | 0.236 | 0.016 | 0.093 | |
selex.getRound0 | 0.270 | 0.013 | 0.144 | |
selex.getSeqfilter | 0.093 | 0.005 | 0.045 | |
selex.infogain | 2.637 | 0.089 | 0.728 | |
selex.infogainSummary | 1.326 | 0.058 | 0.394 | |
selex.jvmStatus | 0.112 | 0.004 | 0.045 | |
selex.kmax | 1.820 | 0.313 | 0.995 | |
selex.kmerPSFM | 0.405 | 0.071 | 0.330 | |
selex.loadAnnotation | 0.236 | 0.012 | 0.123 | |
selex.mm | 0.601 | 0.030 | 0.306 | |
selex.mmProb | 0.603 | 0.053 | 0.265 | |
selex.mmSummary | 0.340 | 0.022 | 0.264 | |
selex.revcomp | 0.690 | 0.052 | 0.464 | |
selex.run | 1.892 | 0.056 | 0.655 | |
selex.sample | 0.440 | 0.013 | 0.120 | |
selex.samplePSFM | 1.100 | 0.034 | 0.335 | |
selex.sampleSummary | 0.204 | 0.010 | 0.092 | |
selex.saveAnnotation | 0.099 | 0.010 | 0.055 | |
selex.seqfilter | 13.477 | 1.437 | 4.332 | |
selex.setwd | 0.119 | 0.002 | 0.030 | |
selex.split | 1.116 | 0.029 | 0.269 | |
selex.summary | 2.333 | 0.103 | 0.768 | |