Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:45:47 -0400 (Thu, 15 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE GSBenchMark PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 147/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
GSBenchMark 1.8.0 Bahman Afsari
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |
Package: GSBenchMark |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings GSBenchMark_1.8.0.tar.gz |
StartedAt: 2020-10-15 13:26:29 -0400 (Thu, 15 Oct 2020) |
EndedAt: 2020-10-15 13:27:00 -0400 (Thu, 15 Oct 2020) |
EllapsedTime: 30.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSBenchMark.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings GSBenchMark_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/GSBenchMark.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GSBenchMark/DESCRIPTION’ ... OK * this is package ‘GSBenchMark’ version ‘1.8.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSBenchMark’ can be installed ... OK * checking installed package size ... NOTE installed size is 41.9Mb sub-directories of 1Mb or more: data 41.8Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.11-data-experiment/meat/GSBenchMark.Rcheck/00check.log’ for details.
GSBenchMark.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL GSBenchMark ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘GSBenchMark’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSBenchMark)
GSBenchMark.Rcheck/GSBenchMark-Ex.timings
name | user | system | elapsed | |
GSBenchMarkDatasets | 0.246 | 0.008 | 0.255 | |
bipolar_GDS2190 | 0.211 | 0.000 | 0.211 | |
breast_GDS807 | 0.197 | 0.004 | 0.201 | |
diracpathways | 0.024 | 0.000 | 0.024 | |
exprsdata | 0.288 | 0.004 | 0.292 | |
leukemia_GSEA | 0.182 | 0.008 | 0.190 | |
logexprsdata | 0.282 | 0.020 | 0.302 | |
marfan_GDS2960 | 0.094 | 0.004 | 0.098 | |
melanoma_GDS2735 | 0.239 | 0.008 | 0.247 | |
parkinsons_GDS2519 | 0.42 | 0.02 | 0.44 | |
phenotypes | 0.309 | 0.012 | 0.321 | |
prostate_GDS2545_m_nf | 0.153 | 0.020 | 0.173 | |
prostate_GDS2545_m_p | 0.325 | 0.008 | 0.333 | |
prostate_GDS2545_p_nf | 0.290 | 0.012 | 0.302 | |
sarcoma_data | 0.494 | 0.056 | 0.550 | |
squamous_GDS2520 | 0.192 | 0.008 | 0.200 | |