Paul Shannon
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/trena |
| Branch: RELEASE_3_11 |
| Last Commit: 559e09f |
| Last Changed Date: 2020-06-29 19:10:04 -0400 (Mon, 29 Jun 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:57 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE trena PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1831/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| trena 1.10.2 Paul Shannon
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: trena |
| Version: 1.10.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/trena_1.10.2.tar.gz && rm -rf trena.buildbin-libdir && mkdir trena.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trena.buildbin-libdir trena_1.10.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL trena_1.10.2.zip && rm trena_1.10.2.tar.gz trena_1.10.2.zip |
| StartedAt: 2020-10-16 18:55:00 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:58:52 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 232.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/trena_1.10.2.tar.gz && rm -rf trena.buildbin-libdir && mkdir trena.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trena.buildbin-libdir trena_1.10.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL trena_1.10.2.zip && rm trena_1.10.2.tar.gz trena_1.10.2.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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100 7358k 100 7358k 0 0 36.5M 0 --:--:-- --:--:-- --:--:-- 37.4M
install for i386
* installing *source* package 'trena' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
See system.file("LICENSE", package="MotifDb") for use restrictions.
** help
*** installing help indices
converting help for package 'trena'
finding HTML links ... done
BayesSpikeSolver-class html
BayesSpikeSolver html
CandidateFilter-class html
EnsembleSolver-class html
EnsembleSolver html
FootprintFilter-class html
FootprintFinder-class html
GeneOntologyFilter-class html
HumanDHSFilter-class html
LassoPVSolver-class html
LassoPVSolver html
LassoSolver-class html
LassoSolver html
MotifMatcher-class html
finding level-2 HTML links ... done
PCAMax html
PearsonSolver-class html
PearsonSolver html
RandomForestSolver-class html
RandomForestSolver html
RidgeSolver-class html
RidgeSolver html
Solver-class html
SpearmanSolver-class html
SpearmanSolver html
Trena-class html
VarianceFilter-class html
XGBoostSolver-class html
XGBoostSolver html
addStats html
addStatsSimple html
assessSnp html
closeDatabaseConnections html
createGeneModelFromRegulatoryRegions html
createGeneModelFromTfList html
elasticNetSolver html
findMatchesByChromosomalRegion html
getAssayData html
getAvailableSolvers html
getCandidates-FootprintFilter-method html
getCandidates-GeneOntologyFilter-method
html
getCandidates-HumanDHSFilter-method html
getCandidates-VarianceFilter-method html
getCandidates html
getChromLoc html
getCoverage html
getEncodeRegulatoryTableNames-HumanDHSFilter
html
getFootprintsForGene html
getFootprintsInRegion html
getGeneModelTableColumnNames html
getGenePromoterRegion html
getGtfGeneBioTypes html
getGtfMoleculeTypes html
getPfms html
getPromoterRegionsAllGenes html
getProximalPromoter html
getRegulators html
getRegulatoryChromosomalRegions html
getRegulatoryRegions html
getRegulatoryTableColumnNames html
getSequence html
getSolverNames html
getTarget html
normalizeModel html
parseChromLocString html
parseDatabaseUri html
rescalePredictorWeights html
run html
show-HumanDHSFilter-method html
show.BayesSpikeSolver html
show.EnsembleSolver html
show.LassoPVSolver html
show.LassoSolver html
show.MotifMatcher html
show.PearsonSolver html
show.RandomForestSolver html
show.RidgeSolver html
show.SpearmanSolver html
show.XGBoostSolver html
solve.BayesSpike html
solve.Ensemble html
solve.Lasso html
solve.LassoPV html
solve.Pearson html
solve.RandomForest html
solve.Ridge html
solve.Spearman html
solve.XGBoost html
trena-package html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpOWoT0B/R.INSTALL27f81eb170ee/trena/man/trena-package.Rd:24: missing link 'SqrtLassoSolver'
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package can be loaded from final location
See system.file("LICENSE", package="MotifDb") for use restrictions.
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'trena' ...
** testing if installed package can be loaded
See system.file("LICENSE", package="MotifDb") for use restrictions.
* MD5 sums
packaged installation of 'trena' as trena_1.10.2.zip
* DONE (trena)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'trena' successfully unpacked and MD5 sums checked