Package: tigre

Version: 1.41.0

Command: rm -rf tigre.buildbin-libdir && mkdir tigre.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tigre_1.41.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tigre.buildbin-libdir

StartedAt: 2020-01-16 11:56:52 -0500 (Thu, 16 Jan 2020)

EndedAt: 2020-01-16 11:57:23 -0500 (Thu, 16 Jan 2020)

EllapsedTime: 30.4 seconds

RetCode: 0

Status:  OK

PackageFile: tigre_1.41.0.tgz

PackageFileSize: 1.081 MiB

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### Running command:
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###   rm -rf tigre.buildbin-libdir && mkdir tigre.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tigre_1.41.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R tigre.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tigre.buildbin-libdir tigre_1.41.0.tar.gz'
>>>>>>> 

* installing *source* package ‘tigre’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include   -fPIC  -Wall -g -O2  -c miscCFunctions.c -o miscCFunctions.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/tigre.buildbin-libdir/00LOCK-tigre/00new/tigre/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tigre)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tigre.buildbin-libdir/tigre/libs//tigre.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "tigre.buildbin-libdir/tigre/libs//tigre.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "tigre.buildbin-libdir/tigre/libs//tigre.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "tigre.buildbin-libdir/tigre/libs//tigre.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "tigre.buildbin-libdir/tigre/libs//tigre.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "tigre.buildbin-libdir/tigre/libs//tigre.so"