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INSTALL report for tRanslatome on tokay2

This page was generated on 2020-10-17 11:57:57 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE tRanslatome PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1825/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tRanslatome 1.26.0
Toma Tebaldi , Erik Dassi
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/tRanslatome
Branch: RELEASE_3_11
Last Commit: c3a2f15
Last Changed Date: 2020-04-27 14:34:44 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  NA 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: tRanslatome
Version: 1.26.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/tRanslatome_1.26.0.tar.gz && rm -rf tRanslatome.buildbin-libdir && mkdir tRanslatome.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tRanslatome.buildbin-libdir tRanslatome_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL tRanslatome_1.26.0.zip && rm tRanslatome_1.26.0.tar.gz tRanslatome_1.26.0.zip
StartedAt: 2020-10-16 18:08:13 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:09:34 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 80.2 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/tRanslatome_1.26.0.tar.gz && rm -rf tRanslatome.buildbin-libdir && mkdir tRanslatome.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tRanslatome.buildbin-libdir tRanslatome_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL tRanslatome_1.26.0.zip && rm tRanslatome_1.26.0.tar.gz tRanslatome_1.26.0.zip
###
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100  625k  100  625k    0     0  8401k      0 --:--:-- --:--:-- --:--:-- 9072k

install for i386

* installing *source* package 'tRanslatome' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
Warning message:
Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2 
** help
*** installing help indices
  converting help for package 'tRanslatome'
    finding HTML links ... done
    CVplot                                  html  
    DEGs                                    html  
    DEGs.table                              html  
    EnrichedSets                            html  
    FC.threshold                            html  
    GOComparison                            html  
    GOEnrichment                            html  
    GOsets                                  html  
    GOsims                                  html  
    Heatmap                                 html  
    Histogram                               html  
    IdentityPlot                            html  
    MAplot                                  html  
    Radar                                   html  
    RegulatoryEnrichment                    html  
    SDplot                                  html  
    Scatterplot                             html  
    SimilarityPlot                          html  
    TranslatomeDataset                      html  
    average.similarity.scores               html  
    computeDEGs                             html  
    enriched.table                          html  
    getConditionA                           html  
    getConditionB                           html  
    getConditionC                           html  
    getConditionD                           html  
    getConditionLabels                      html  
    getDEGs                                 html  
    getDEGsMethod                           html  
    getDataType                             html  
    getExprMatrix                           html  
    getLevelLabels                          html  
    identity.matrix                         html  
    label.condition                         html  
    label.level.DEGs                        html  
    label.level.enriched                    html  
    newTranslatomeDataset                   html  
    significance.threshold                  html  
    similarity.matrix                       html  
    tRanslatome-package                     html  
    tRanslatomeSampleData                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package can be loaded from final location
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'tRanslatome' ...
** testing if installed package can be loaded
Warning: Package 'DESeq' is deprecated and will be removed from Bioconductor
  version 3.13. Please use DESeq2

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
* MD5 sums
packaged installation of 'tRanslatome' as tRanslatome_1.26.0.zip
* DONE (tRanslatome)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'tRanslatome' successfully unpacked and MD5 sums checked