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BUILD BIN report for synergyfinder on tokay2

This page was generated on 2020-10-16 11:59:01 -0400 (Fri, 16 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE synergyfinder PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1772/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
synergyfinder 2.2.4
Shuyu Zheng
Snapshot Date: 2020-10-15 14:40:03 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/synergyfinder
Branch: RELEASE_3_11
Last Commit: d110362
Last Changed Date: 2020-07-06 03:47:36 -0400 (Mon, 06 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: synergyfinder
Version: 2.2.4
Command: rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.2.4.tar.gz
StartedAt: 2020-10-16 11:27:19 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 11:28:15 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 55.5 seconds
RetCode: 0
Status:  OK  
PackageFile: synergyfinder_2.2.4.zip
PackageFileSize: 457 KiB

Command output

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### Running command:
###
###   rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.2.4.tar.gz
###
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install for i386

* installing *source* package 'synergyfinder' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c covariance.c -o covariance.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kriging.c -o kriging.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c synergyfinder_init.c -o synergyfinder_init.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/synergyfinder.buildbin-libdir/00LOCK-synergyfinder/00new/synergyfinder/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'synergyfinder'
    finding HTML links ... done
    AddNoise                                html  
    Bliss                                   html  
    CalculateSynergy                        html  
    CorrectBaseLine                         html  
    ExtractSingleDrug                       html  
    FindModelType                           html  
    FitDoseResponse                         html  
    HSA                                     html  
    ImputeNA                                html  
    Loewe                                   html  
    PlotDoseResponse                        html  
    PlotSynergy                             html  
    ReshapeData                             html  
    ZIP                                     html  
    dot-ExtendedScores                      html  
    kriging                                 html  
    mathews_screening_data                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'synergyfinder' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c covariance.c -o covariance.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kriging.c -o kriging.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c synergyfinder_init.c -o synergyfinder_init.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/synergyfinder.buildbin-libdir/synergyfinder/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'synergyfinder' as synergyfinder_2.2.4.zip
* DONE (synergyfinder)