Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-16 11:59:01 -0400 (Fri, 16 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE synergyfinder PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1772/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
synergyfinder 2.2.4 Shuyu Zheng
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: synergyfinder |
Version: 2.2.4 |
Command: rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.2.4.tar.gz |
StartedAt: 2020-10-16 11:27:19 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 11:28:15 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 55.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: synergyfinder_2.2.4.zip |
PackageFileSize: 457 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf synergyfinder.buildbin-libdir && mkdir synergyfinder.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=synergyfinder.buildbin-libdir synergyfinder_2.2.4.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'synergyfinder' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c covariance.c -o covariance.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kriging.c -o kriging.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c synergyfinder_init.c -o synergyfinder_init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/synergyfinder.buildbin-libdir/00LOCK-synergyfinder/00new/synergyfinder/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'synergyfinder' finding HTML links ... done AddNoise html Bliss html CalculateSynergy html CorrectBaseLine html ExtractSingleDrug html FindModelType html FitDoseResponse html HSA html ImputeNA html Loewe html PlotDoseResponse html PlotSynergy html ReshapeData html ZIP html dot-ExtendedScores html kriging html mathews_screening_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'synergyfinder' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c covariance.c -o covariance.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kriging.c -o kriging.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c synergyfinder_init.c -o synergyfinder_init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o synergyfinder.dll tmp.def covariance.o kriging.o synergyfinder_init.o utils.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/synergyfinder.buildbin-libdir/synergyfinder/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'synergyfinder' as synergyfinder_2.2.4.zip * DONE (synergyfinder)