Koen Van den Berge
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/stageR |
| Branch: RELEASE_3_11 |
| Last Commit: c821d27 |
| Last Changed Date: 2020-04-27 15:11:40 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:52 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE stageR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1739/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| stageR 1.10.0 Koen Van den Berge
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: stageR |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/stageR_1.10.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL stageR_1.10.0.zip && rm stageR_1.10.0.tar.gz stageR_1.10.0.zip |
| StartedAt: 2020-10-16 18:20:38 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:21:29 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 51.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/stageR_1.10.0.tar.gz && rm -rf stageR.buildbin-libdir && mkdir stageR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=stageR.buildbin-libdir stageR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL stageR_1.10.0.zip && rm stageR_1.10.0.tar.gz stageR_1.10.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 909k 100 909k 0 0 5334k 0 --:--:-- --:--:-- --:--:-- 5547k
install for i386
* installing *source* package 'stageR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'stageR'
finding HTML links ... done
adjustedAlphaLevel html
esetProstate html
getAdjustedPValues html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsVHDsz/R.INSTALL211013686b52/stageR/man/getAdjustedPValues.Rd:34: missing link 'stageWiseAdjustment,stageR,character,numeric-method'
getAlpha html
getMethod html
getPConfirmation html
getPScreen html
getResults html
getSignificantGenes html
getSignificantTx html
getTx2gene html
hammer.eset html
isAdjusted html
isPScreenAdjusted html
stageR html
stageRClass html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsVHDsz/R.INSTALL211013686b52/stageR/man/stageRClass.Rd:19: missing link 'getAdjustedPValues,stageR,logical,logical-method'
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpsVHDsz/R.INSTALL211013686b52/stageR/man/stageRClass.Rd:19: missing link 'getResults,stageR-method'
stageRTx html
stageWiseAdjustment html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'stageR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stageR' as stageR_1.10.0.zip
* DONE (stageR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'stageR' successfully unpacked and MD5 sums checked