Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:55:51 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ssize PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1734/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ssize 1.62.0 Gregory R. Warnes
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: ssize |
Version: 1.62.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ssize.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ssize_1.62.0.tar.gz |
StartedAt: 2020-10-17 05:49:31 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 05:49:59 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 27.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ssize.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:ssize.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings ssize_1.62.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/ssize.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ssize/DESCRIPTION’ ... OK * this is package ‘ssize’ version ‘1.62.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ssize’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘xtable’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE crit.fn: no visible global function definition for ‘pt’ delta: no visible global function definition for ‘power.t.test’ delta.plot: no visible global function definition for ‘ecdf’ delta.plot: no visible global function definition for ‘axis’ delta.plot: no visible global function definition for ‘par’ delta.plot: no visible global function definition for ‘lines’ delta.plot: no visible global function definition for ‘text’ pow: no visible global function definition for ‘power.t.test’ power.plot: no visible global function definition for ‘ecdf’ power.plot: no visible global function definition for ‘axis’ power.plot: no visible global function definition for ‘par’ power.plot: no visible global function definition for ‘lines’ power.plot: no visible global function definition for ‘text’ power.t.test.FDR: no visible global function definition for ‘uniroot’ ssize: no visible global function definition for ‘power.t.test’ ssize.plot: no visible global function definition for ‘ecdf’ ssize.plot: no visible global function definition for ‘axis’ ssize.plot: no visible global function definition for ‘par’ ssize.plot: no visible global function definition for ‘lines’ ssize.plot: no visible global function definition for ‘text’ Undefined global functions or variables: axis ecdf lines par power.t.test pt text uniroot Consider adding importFrom("graphics", "axis", "lines", "par", "text") importFrom("stats", "ecdf", "power.t.test", "pt", "uniroot") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.11-bioc/meat/ssize.Rcheck/00check.log’ for details.
ssize.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL ssize ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘ssize’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssize)
ssize.Rcheck/ssize-Ex.timings
name | user | system | elapsed | |
exp.sd | 0.045 | 0.005 | 0.050 | |
pow | 4.072 | 0.013 | 4.087 | |
power.t.test.FDR | 0.034 | 0.000 | 0.035 | |