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### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:splineTimeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings splineTimeR_1.16.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/splineTimeR.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'splineTimeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'splineTimeR' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'Biobase', 'igraph', 'limma', 'GSEABase', 'gtools', 'splines',
  'GeneNet', 'longitudinal', 'FIs'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'splineTimeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
networkProperties: no visible global function definition for 'is'
networkProperties: no visible global function definition for 'data'
networkProperties: no visible binding for global variable 'FIs'
networkProperties: no visible global function definition for 'pdf'
networkProperties: no visible global function definition for 'par'
networkProperties: no visible global function definition for 'ecdf'
networkProperties: no visible global function definition for 'hist'
networkProperties: no visible global function definition for 'dev.off'
networkProperties: no visible global function definition for 'lm'
networkProperties: no visible global function definition for 'abline'
networkProperties: no visible global function definition for 'legend'
networkProperties: no visible global function definition for 'axis'
pathEnrich: no visible global function definition for 'is'
pathEnrich: no visible global function definition for 'p.adjust'
pathEnrich: no visible global function definition for 'write.table'
splineDiffExprs: no visible global function definition for 'is'
splineDiffExprs: no visible global function definition for
  'model.matrix'
splineNetRecon: no visible global function definition for 'is'
splinePlot: no visible global function definition for 'is'
splinePlot: no visible global function definition for 'model.matrix'
splinePlot: no visible global function definition for 'predict'
splinePlot: no visible global function definition for 'pdf'
splinePlot: no visible global function definition for 'points'
splinePlot: no visible global function definition for 'legend'
splinePlot: no visible global function definition for 'lines'
splinePlot: no visible global function definition for 'dev.off'
Undefined global functions or variables:
  FIs abline axis data dev.off ecdf hist is legend lines lm
  model.matrix p.adjust par pdf points predict write.table
Consider adding
  importFrom("grDevices", "dev.off", "pdf")
  importFrom("graphics", "abline", "axis", "hist", "legend", "lines",
             "par", "points")
  importFrom("methods", "is")
  importFrom("stats", "ecdf", "lm", "model.matrix", "p.adjust",
             "predict")
  importFrom("utils", "data", "write.table")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
networkProperties 39.03   2.50   41.91
splineNetRecon    34.40   2.35   36.76
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
networkProperties 39.63   2.31   42.03
splineNetRecon    34.31   2.38   36.70
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/splineTimeR.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/splineTimeR_1.16.0.tar.gz && rm -rf splineTimeR.buildbin-libdir && mkdir splineTimeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splineTimeR.buildbin-libdir splineTimeR_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL splineTimeR_1.16.0.zip && rm splineTimeR_1.16.0.tar.gz splineTimeR_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  533k  100  533k    0     0  7674k      0 --:--:-- --:--:-- --:--:-- 8600k

install for i386

* installing *source* package 'splineTimeR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'splineTimeR'
    finding HTML links ... done
    TCsimData                               html  
    networkProperties                       html  
    finding level-2 HTML links ... done

    pathEnrich                              html  
    splineDiffExprs                         html  
    splineNetRecon                          html  
    splinePlot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'splineTimeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'splineTimeR' as splineTimeR_1.16.0.zip
* DONE (splineTimeR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'splineTimeR' successfully unpacked and MD5 sums checked