Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:51 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE sparseDOSSA PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1701/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
sparseDOSSA 1.12.0 Boyu Ren
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | NA | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: sparseDOSSA |
Version: 1.12.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sparseDOSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings sparseDOSSA_1.12.0.tar.gz |
StartedAt: 2020-10-17 08:29:26 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 08:31:22 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 116.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: sparseDOSSA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sparseDOSSA.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings sparseDOSSA_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/sparseDOSSA.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'sparseDOSSA/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'sparseDOSSA' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'sparseDOSSA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed sparseDOSSA 9.06 0.04 9.15 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed sparseDOSSA 6.11 0.01 6.18 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'RunTests.R' OK ** running tests for arch 'x64' ... Running 'RunTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
sparseDOSSA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/sparseDOSSA_1.12.0.tar.gz && rm -rf sparseDOSSA.buildbin-libdir && mkdir sparseDOSSA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseDOSSA.buildbin-libdir sparseDOSSA_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL sparseDOSSA_1.12.0.zip && rm sparseDOSSA_1.12.0.tar.gz sparseDOSSA_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 570k 100 570k 0 0 7866k 0 --:--:-- --:--:-- --:--:-- 8784k install for i386 * installing *source* package 'sparseDOSSA' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'sparseDOSSA' finding HTML links ... done sparseDOSSA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'sparseDOSSA' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'sparseDOSSA' as sparseDOSSA_1.12.0.zip * DONE (sparseDOSSA) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'sparseDOSSA' successfully unpacked and MD5 sums checked
sparseDOSSA.Rcheck/tests_i386/RunTests.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("sparseDOSSA") Parameters BEFORE Calibration File Length exp NA Length vdMu NA length vdSD NA length vdPercentZero NA Read depth 8030 Parameters AFTER Calibration File (if no calibration file is used, defaults are shown) Length exp 1 Length vdMu 1 length vdSD 1 length vdPercentZero 1 Read depth 8030 Feature Count 300 func_generate_random_lognormal_matrix START start funcGenerateFeatureParameters funcGenerateFeatureParameters: Generating vdExp Vector. LogMu 2.39794758911363 LogSD 1.33357395233333 Threshold 26.178898826878 funcGenerateFeatureParameters: Generating vdSD Vector. funcGenerateFeatureParameters: Generating vdMu Vector. funcGenerateFeatureParameters: Generating vdPercentZero Vector. ***Scale*** 1 ***vdPercentZero*** 0.3876521595863820.5012820479589080.6426777338705610.6437241888648060.7660754409368890.97850870467247 stop funcGenerateFeatureParameters func_generate_random_lognormal_matrix: START Making features Start funcShuffleMatrix stop func_generate_random_lognormal_matrix start func_generate_random_lognormal_with_outliers Stop func_generate_random_lognormal_with_outliers start func_generate_random_lognormal_with_multivariate_spikes stop func_generate_random_lognormal_with_multivariate_spikes RUNIT TEST PROTOCOL -- Sat Oct 17 08:31:06 2020 *********************************************** Number of test functions: 0 Number of errors: 0 Number of failures: 0 1 Test Suite : sparseDOSSA RUnit Tests - 0 test functions, 0 errors, 0 failures Number of test functions: 0 Number of errors: 0 Number of failures: 0 Warning message: In sparseDOSSA(bugs_to_spike = 0, calibrate = NA, datasetCount = 1, : number of associations = 0, and no spike file specified; no bug-bug spike-ins will be done. > > proc.time() user system elapsed 8.23 0.28 8.51 |
sparseDOSSA.Rcheck/tests_x64/RunTests.Rout R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("sparseDOSSA") Parameters BEFORE Calibration File Length exp NA Length vdMu NA length vdSD NA length vdPercentZero NA Read depth 8030 Parameters AFTER Calibration File (if no calibration file is used, defaults are shown) Length exp 1 Length vdMu 1 length vdSD 1 length vdPercentZero 1 Read depth 8030 Feature Count 300 func_generate_random_lognormal_matrix START start funcGenerateFeatureParameters funcGenerateFeatureParameters: Generating vdExp Vector. LogMu 2.39794758911363 LogSD 1.33357395233333 Threshold 26.178898826878 funcGenerateFeatureParameters: Generating vdSD Vector. funcGenerateFeatureParameters: Generating vdMu Vector. funcGenerateFeatureParameters: Generating vdPercentZero Vector. ***Scale*** 1 ***vdPercentZero*** 0.3876521595863820.5012820479589080.6426777338705610.6437241888648060.7660754409368890.97850870467247 stop funcGenerateFeatureParameters func_generate_random_lognormal_matrix: START Making features Start funcShuffleMatrix stop func_generate_random_lognormal_matrix start func_generate_random_lognormal_with_outliers Stop func_generate_random_lognormal_with_outliers start func_generate_random_lognormal_with_multivariate_spikes stop func_generate_random_lognormal_with_multivariate_spikes RUNIT TEST PROTOCOL -- Sat Oct 17 08:31:15 2020 *********************************************** Number of test functions: 0 Number of errors: 0 Number of failures: 0 1 Test Suite : sparseDOSSA RUnit Tests - 0 test functions, 0 errors, 0 failures Number of test functions: 0 Number of errors: 0 Number of failures: 0 Warning message: In sparseDOSSA(bugs_to_spike = 0, calibrate = NA, datasetCount = 1, : number of associations = 0, and no spike file specified; no bug-bug spike-ins will be done. > > proc.time() user system elapsed 8.18 0.12 8.29 |
sparseDOSSA.Rcheck/examples_i386/sparseDOSSA-Ex.timings
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sparseDOSSA.Rcheck/examples_x64/sparseDOSSA-Ex.timings
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