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###
### Running command:
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###   chmod a+r seq2pathway -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data seq2pathway
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* checking for file 'seq2pathway/DESCRIPTION' ... OK
* preparing 'seq2pathway':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'seq2pathwaypackage.Rnw' using Sweave

C:\Users\biocbuild\bbs-3.11-bioc\tmpdir\RtmpOMfAgl/inputfile_20201017_00_35_04_seq2gene_log.py:6: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
  import imp
Traceback (most recent call last):
  File "C:\Users\biocbuild\bbs-3.11-bioc\tmpdir\RtmpOMfAgl/inputfile_20201017_00_35_04_seq2gene_log.py", line 7, in <module>
    imp.load_source('Function_PeakMutationAnnotation_GENCODE_05182015','C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpK0Aq3H/Rinst1334245d4645/seq2pathway//scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py')
  File "C:\Python37\lib\imp.py", line 171, in load_source
    module = _load(spec)
  File "<frozen importlib._bootstrap>", line 696, in _load
  File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 724, in exec_module
  File "<frozen importlib._bootstrap_external>", line 860, in get_code
  File "<frozen importlib._bootstrap_external>", line 791, in source_to_code
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpK0Aq3H/Rinst1334245d4645/seq2pathway//scripts/Function_PeakMutationAnnotation_GENCODE_05182015.py", line 15
    print 'python process start:', datetime.now()
                                ^
SyntaxError: invalid syntax
Warning in system(command, intern = TRUE) :
  running command 'C:\Python37\python.exe C:\Users\biocbuild\bbs-3.11-bioc\tmpdir\RtmpOMfAgl/inputfile_20201017_00_35_04_seq2gene_log.py' had status 1

Error: processing vignette 'seq2pathwaypackage.Rnw' failed with diagnostics:
 chunk 7 (label = runseq2gene) 
Error in read.table(file = tmpoutfile_UTR3, header = TRUE, sep = "\t") : 
  no lines available in input

--- failed re-building 'seq2pathwaypackage.Rnw'

SUMMARY: processing the following file failed:
  'seq2pathwaypackage.Rnw'

Error: Vignette re-building failed.
Execution halted