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### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:scTensor.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings scTensor_1.4.3.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/scTensor.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘scTensor/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘scTensor’ version ‘1.4.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘scTensor’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.simulateDropoutCounts: no visible binding for global variable 'v'
.simulateDropoutCounts: no visible binding for global variable 'm'
Undefined global functions or variables:
  m v
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.11-bioc/meat/scTensor.Rcheck/00check.log’
for details.

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###
### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL scTensor
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* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘scTensor’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'show' in package 'scTensor'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scTensor)

R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library("testthat")
> library("scTensor")


> 
> options(testthat.use_colours = FALSE)
> 
> test_file("testthat/test_GermMale.R")
✔ |  OK F W S | Context

⠏ |   0       | GermMale
✖ |   0 1     | GermMale
────────────────────────────────────────────────────────────────────────────────
test_GermMale.R:5: failure: (unknown)
dim(GermMale) not equivalent to c(2547, 852).
1/2 mismatches
[1] 242 - 2547 == -2305
────────────────────────────────────────────────────────────────────────────────

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 0.1 s

OK:       0
Failed:   1
Warnings: 0
Skipped:  0
> test_file("testthat/test_tsneGermMale.R")
✔ |  OK F W S | Context

⠏ |   0       | tsneGermMale
✔ |   1       | tsneGermMale

══ Results ═════════════════════════════════════════════════════════════════════
OK:       1
Failed:   0
Warnings: 0
Skipped:  0
> test_file("testthat/test_labelGermMale.R")
✔ |  OK F W S | Context

⠏ |   0       | labelGermMale
✔ |   1       | labelGermMale

══ Results ═════════════════════════════════════════════════════════════════════
OK:       1
Failed:   0
Warnings: 0
Skipped:  0
> test_file("testthat/test_cellCellFunctions.R")
✔ |  OK F W S | Context

⠏ |   0       | cellCellFunctions
⠋ |   1       | cellCellFunctions
⠸ |   3 1     | cellCellFunctions
✖ |   3 3     | cellCellFunctions [1.1 s]
────────────────────────────────────────────────────────────────────────────────
test_cellCellFunctions.R:21: failure: (unknown)
is.null(metadata(sce)$lrbase) isn't false.

test_cellCellFunctions.R:22: failure: (unknown)
is.null(metadata(sce)$color) isn't false.

test_cellCellFunctions.R:23: failure: (unknown)
is.null(metadata(sce)$label) isn't false.
────────────────────────────────────────────────────────────────────────────────

══ Results ═════════════════════════════════════════════════════════════════════
Duration: 1.1 s

OK:       3
Failed:   3
Warnings: 0
Skipped:  0
> test_file("testthat/test_CCSParamsFunctions.R")
✔ |  OK F W S | Context

⠏ |   0       | CCSParamsFunctions
✔ |  11       | CCSParamsFunctions

══ Results ═════════════════════════════════════════════════════════════════════
OK:       11
Failed:   0
Warnings: 0
Skipped:  0
> test_file("testthat/test_convertToNCBIGeneID.R")
✔ |  OK F W S | Context

⠏ |   0       | convertToNCBIGeneID
✔ |   4       | convertToNCBIGeneID

══ Results ═════════════════════════════════════════════════════════════════════
OK:       4
Failed:   0
Warnings: 0
Skipped:  0
> 
> proc.time()
   user  system elapsed 
 31.798   4.492  35.102