Jitao David Zhang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/rqubic |
| Branch: RELEASE_3_11 |
| Last Commit: 555a638 |
| Last Changed Date: 2020-04-27 14:26:34 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:41 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE rqubic PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1535/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rqubic 1.34.0 Jitao David Zhang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: rqubic |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rqubic_1.34.0.tar.gz && rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rqubic_1.34.0.zip && rm rqubic_1.34.0.tar.gz rqubic_1.34.0.zip |
| StartedAt: 2020-10-16 17:16:55 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:17:57 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 61.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/rqubic_1.34.0.tar.gz && rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rqubic.buildbin-libdir rqubic_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL rqubic_1.34.0.zip && rm rqubic_1.34.0.tar.gz rqubic_1.34.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 74283 100 74283 0 0 1143k 0 --:--:-- --:--:-- --:--:-- 1295k
install for i386
* installing *source* package 'rqubic' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (flag=ss) (*m_cnt)++;
^~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o
In file included from discretize.c:9:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o
In file included from fib.c:35:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rqubic'
finding HTML links ... done
QUBICBiclusterSet-class html
finding level-2 HTML links ... done
combineBiclusts-methods html
discretize html
eSetDimName html
fcFilter-methods html
fcFilter html
features-methods html
generateSeeds-methods html
parseQubicBlocks html
quBicluster html
readBiclusterResults html
rqubic-package html
writeQubicInputFile html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rqubic' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bicluster.c -o bicluster.o
bicluster.c: In function 'seed_intersect_r':
bicluster.c:354:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
if (flag=ss) (*m_cnt)++;
^~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discretize.c -o discretize.o
In file included from discretize.c:9:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fib.c -o fib.o
In file included from fib.c:35:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c graph.c -o graph.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rqubic.c -o rqubic.o
In file included from rqubic.c:5:
rqubic.h:61:20: warning: 'MINCOL_ATT_NAME' defined but not used [-Wunused-variable]
static const char *MINCOL_ATT_NAME="minimumCol";
^~~~~~~~~~~~~~~
rqubic.h:60:20: warning: 'EDGELIST_ATT_NAME' defined but not used [-Wunused-variable]
static const char *EDGELIST_ATT_NAME="edgelist";
^~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o rqubic.dll tmp.def bicluster.o discretize.o fib.o graph.o rqubic.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/rqubic.buildbin-libdir/rqubic/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rqubic' as rqubic_1.34.0.zip
* DONE (rqubic)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'rqubic' successfully unpacked and MD5 sums checked