Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:27 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ropls PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1526/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ropls 1.20.0 Etienne A. Thevenot
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: ropls |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.20.0.tar.gz |
StartedAt: 2020-10-17 04:48:54 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:50:35 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 101.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ropls.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ropls.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ropls/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ropls’ version ‘1.20.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ropls’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘MultiDataSet’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getMset 8.865 0.221 9.099 opls 6.549 0.174 6.731 plot 5.071 0.139 5.267 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.11-bioc/meat/ropls.Rcheck/00check.log’ for details.
ropls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ropls ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ropls’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls)
ropls.Rcheck/ropls-Ex.timings
name | user | system | elapsed | |
checkW4M | 0.186 | 0.019 | 0.207 | |
coef | 1.019 | 0.146 | 1.167 | |
fitted | 1.814 | 0.112 | 1.928 | |
fromW4M | 0.213 | 0.004 | 0.219 | |
getEset | 0.918 | 0.075 | 0.996 | |
getLoadingMN | 0.760 | 0.067 | 0.826 | |
getMset | 8.865 | 0.221 | 9.099 | |
getPcaVarVn | 0.144 | 0.010 | 0.154 | |
getScoreMN | 0.957 | 0.067 | 1.028 | |
getSubsetVi | 0.096 | 0.007 | 0.103 | |
getSummaryDF | 0.960 | 0.050 | 1.012 | |
getVipVn | 0.953 | 0.066 | 1.021 | |
getWeightMN | 1.369 | 0.053 | 1.422 | |
opls-class | 2.880 | 0.141 | 3.026 | |
opls | 6.549 | 0.174 | 6.731 | |
oplsMultiDataSet-class | 0.000 | 0.001 | 0.000 | |
plot | 5.071 | 0.139 | 5.267 | |
predict | 0.093 | 0.003 | 0.097 | |
0.937 | 0.039 | 0.977 | ||
residuals | 0.621 | 0.026 | 0.649 | |
ropls-package | 3.924 | 0.129 | 4.059 | |
show | 0.983 | 0.052 | 1.037 | |
tested | 0.074 | 0.004 | 0.079 | |
toW4M | 0.202 | 0.006 | 0.209 | |
view | 0.650 | 0.069 | 0.725 | |