Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:59:23 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE rexposome PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1469/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rexposome 1.10.0 Carles Hernandez-Ferrer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: rexposome |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:rexposome.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings rexposome_1.10.0.tar.gz |
StartedAt: 2020-10-17 04:32:41 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 04:36:41 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 240.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rexposome.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:rexposome.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings rexposome_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rexposome/DESCRIPTION’ ... OK * this is package ‘rexposome’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rexposome’ can be installed ... OK * checking installed package size ... NOTE installed size is 6.0Mb sub-directories of 1Mb or more: data 2.8Mb extdata 2.2Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE imputeLOD: multiple local function definitions for ‘faux’ with different formal arguments plotHistogram,ExposomeSet: no visible binding for global variable ‘..density..’ Undefined global functions or variables: ..density.. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed clustering-methods 29.572 0.167 30.743 plotCorrelation-methods 16.799 0.119 17.208 correlation-methods 6.819 0.110 6.934 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.11-bioc/meat/rexposome.Rcheck/00check.log’ for details.
rexposome.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rexposome ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘rexposome’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rexposome)
rexposome.Rcheck/rexposome-Ex.timings
name | user | system | elapsed | |
classification-methods | 0.025 | 0.007 | 0.032 | |
clustering-methods | 29.572 | 0.167 | 30.743 | |
correlation-methods | 6.819 | 0.110 | 6.934 | |
ex_imp | 0.029 | 0.002 | 0.030 | |
expo | 0.035 | 0.019 | 0.054 | |
expo_c | 0.015 | 0.002 | 0.018 | |
expos-methods | 0.344 | 0.014 | 0.357 | |
exposureNames-methods | 0.030 | 0.006 | 0.035 | |
exwas-methods | 0.467 | 0.022 | 0.488 | |
familyNames-methods | 0.023 | 0.003 | 0.025 | |
highAndLow-methods | 1.070 | 0.012 | 1.083 | |
ilod-methods | 0 | 0 | 0 | |
imputation-methods | 0.001 | 0.000 | 0.001 | |
imputeLOD | 0 | 0 | 0 | |
loadExposome | 0.059 | 0.002 | 0.062 | |
loadImputed | 0.021 | 0.002 | 0.023 | |
me | 0.005 | 0.003 | 0.007 | |
mexwas-methods | 1.860 | 0.010 | 1.874 | |
ndim-methods | 0.115 | 0.005 | 0.121 | |
normalityTest-methods | 0.359 | 0.007 | 0.367 | |
pca-methods | 0.117 | 0.005 | 0.122 | |
phenotypeNames-methods | 0.027 | 0.003 | 0.030 | |
plotClassification-methods | 0.000 | 0.000 | 0.001 | |
plotCorrelation-methods | 16.799 | 0.119 | 17.208 | |
plotEXP-methods | 0.331 | 0.006 | 0.339 | |
plotEffect-methods | 1.063 | 0.017 | 1.081 | |
plotExwas-methods | 0.671 | 0.010 | 0.682 | |
plotFamily-methods | 3.053 | 0.062 | 3.125 | |
plotHistogram-methods | 0.384 | 0.004 | 0.388 | |
plotLOD-methods | 0.659 | 0.006 | 0.667 | |
plotMissings-methods | 0.768 | 0.007 | 0.914 | |
plotPCA-methods | 1.886 | 0.015 | 1.905 | |
plotPHE-methods | 0.352 | 0.011 | 0.364 | |
readExposome | 0.072 | 0.002 | 0.083 | |
standardize-methods | 1.055 | 0.016 | 1.316 | |
tableLOD-methods | 0.269 | 0.010 | 0.345 | |
tableMissings-methods | 0.042 | 0.010 | 0.111 | |
tef-methods | 0.483 | 0.024 | 0.528 | |
toES | 0.206 | 0.005 | 0.212 | |
trans-methods | 0.353 | 0.007 | 0.362 | |
volcano_plot | 1.041 | 0.035 | 1.083 | |