Andrey A Shabalin
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/ramwas |
| Branch: RELEASE_3_11 |
| Last Commit: c076b03 |
| Last Changed Date: 2020-04-27 15:04:10 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:32 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE ramwas PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1413/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ramwas 1.12.0 Andrey A Shabalin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: ramwas |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ramwas_1.12.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ramwas_1.12.0.zip && rm ramwas_1.12.0.tar.gz ramwas_1.12.0.zip |
| StartedAt: 2020-10-16 18:52:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:54:24 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 88.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ramwas_1.12.0.tar.gz && rm -rf ramwas.buildbin-libdir && mkdir ramwas.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ramwas.buildbin-libdir ramwas_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ramwas_1.12.0.zip && rm ramwas_1.12.0.tar.gz ramwas_1.12.0.zip
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install for i386
* installing *source* package 'ramwas' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rw_c_code.c -o rw_c_code.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ramwas.buildbin-libdir/00LOCK-ramwas/00new/ramwas/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ramwas'
finding HTML links ... done
MakeBED html
QCs html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMd6Lgr/R.INSTALL23204f0a7f13/ramwas/man/QCs.Rd:71: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
RaMWAS html
cachedRDSload html
findBestNpvs html
get html
getCpGset html
injectSNPsMAF html
finding level-2 HTML links ... done
insilicoFASTQ html
isAbsolutePath html
makefullpath html
manhattan html
mat2cols html
orthonormalizeCovariates html
parameterDump html
parameterPreprocess html
parametersFromFile html
pipeline html
plotCV html
plotFragmentSizeDistributionEstimate html
plotPC html
processCommandLine html
pvalue2qvalue html
qqplotFast html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMd6Lgr/R.INSTALL23204f0a7f13/ramwas/man/qqplotFast.Rd:91: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
ramwas0createArtificialData html
ramwasAnnotateLocations html
ramwasParameters html
rowcolSumSq html
rwDataClass-class html
subsetData html
testPhenotype html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ramwas' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c rw_c_code.c -o rw_c_code.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o ramwas.dll tmp.def rw_c_code.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/ramwas.buildbin-libdir/ramwas/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ramwas' as ramwas_1.12.0.zip
* DONE (ramwas)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ramwas' successfully unpacked and MD5 sums checked