Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:30 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE psygenet2r PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1375/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
psygenet2r 1.20.0 Alba Gutierrez-Sacristan
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: psygenet2r |
Version: 1.20.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/psygenet2r_1.20.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.20.0.zip && rm psygenet2r_1.20.0.tar.gz psygenet2r_1.20.0.zip |
StartedAt: 2020-10-16 18:09:07 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:10:16 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 68.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/psygenet2r_1.20.0.tar.gz && rm -rf psygenet2r.buildbin-libdir && mkdir psygenet2r.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=psygenet2r.buildbin-libdir psygenet2r_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL psygenet2r_1.20.0.zip && rm psygenet2r_1.20.0.tar.gz psygenet2r_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 222k 100 222k 0 0 3481k 0 --:--:-- --:--:-- --:--:-- 3832k install for i386 * installing *source* package 'psygenet2r' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") Note: possible error in 'psygenetGene(x, databse = "ALL")': unused argument (databse = "ALL") Note: possible error in 'psygenetGene(x, databse = "ALL", ': unused argument (databse = "ALL") ** help *** installing help indices converting help for package 'psygenet2r' finding HTML links ... done DataGeNET.Psy-class html JaccardIndexPsy-class html enrichedPD-methods html extract html extractSentences html geneAttrPlot-methods html getUMLs-methods html jaccardEstimation-methods html ndisease html ngene html pantherGraphic-methods html plot-DataGeNET.Psy-ANY-method html plot-JaccardIndexPsy-ANY-method html psygenet2r html psygenetDisease-methods html psygenetDiseaseSentences html psygenetGene-methods html psygenetGeneSentences html qr html topAnatEnrichment-methods html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpe0lSmQ/R.INSTALL1ce8308624b5/psygenet2r/man/topAnatEnrichment-methods.Rd:21: file link 'runTest' in package 'topGO' does not exist and so has been treated as a topic universe html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'psygenet2r' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'psygenet2r' as psygenet2r_1.20.0.zip * DONE (psygenet2r) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'psygenet2r' successfully unpacked and MD5 sums checked