Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:57:26 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE polyester PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1332/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
polyester 1.24.0 Jack Fu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: polyester |
Version: 1.24.0 |
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:polyester.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings polyester_1.24.0.tar.gz |
StartedAt: 2020-10-17 06:59:15 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 07:02:39 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 204.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: polyester.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:polyester.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings polyester_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/polyester.Rcheck' * using R version 4.0.3 (2020-10-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'polyester/DESCRIPTION' ... OK * this is package 'polyester' version '1.24.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'polyester' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: 'zlibbioc' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE add_platform_error: no visible binding for global variable 'model1' add_platform_error: no visible binding for global variable 'model2' add_platform_error: no visible binding for global variable 'model4' add_platform_error: no visible binding for global variable 'model5' add_platform_error: no visible binding for global variable 'model3' add_platform_error: no visible binding for global variable 'model6' add_platform_error: no visible binding for global variable 'model7' generate_fragments: no visible binding for global variable 'empirical_density' generate_fragments: no visible binding for global variable 'rnaf' generate_fragments: no visible binding for global variable 'cdnaf' simulate_experiment_countmat: no visible global function definition for 'is' Undefined global functions or variables: cdnaf empirical_density is model1 model2 model3 model4 model5 model6 model7 rnaf Consider adding importFrom("methods", "is") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_gc_bias 13.72 0.18 14.14 create_read_numbers 8.64 1.27 10.18 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_gc_bias 13.08 0.08 13.15 create_read_numbers 10.47 0.38 10.84 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.11-bioc/meat/polyester.Rcheck/00check.log' for details.
polyester.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/polyester_1.24.0.tar.gz && rm -rf polyester.buildbin-libdir && mkdir polyester.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=polyester.buildbin-libdir polyester_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL polyester_1.24.0.zip && rm polyester_1.24.0.tar.gz polyester_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1876k 100 1876k 0 0 19.8M 0 --:--:-- --:--:-- --:--:-- 21.3M install for i386 * installing *source* package 'polyester' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'polyester' finding HTML links ... done NB html add_error html add_gc_bias html add_platform_error html cdnaf html count_transcripts html create_read_numbers html empirical_density html finding level-2 HTML links ... done fpkm_to_counts html generate_fragments html getAttributeField html get_params html get_reads html gtf_dataframe html loessfit1 html loessfit2 html loessfit3 html loessfit4 html loessfit5 html loessfit6 html loessfit7 html model1 html model2 html model3 html model4 html model5 html model6 html model7 html polyester html reverse_complement html rnaf html seq_gtf html simulate_experiment html simulate_experiment_countmat html simulate_experiment_empirical html write_reads html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'polyester' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'polyester' as polyester_1.24.0.zip * DONE (polyester) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'polyester' successfully unpacked and MD5 sums checked
polyester.Rcheck/examples_i386/polyester-Ex.timings
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polyester.Rcheck/examples_x64/polyester-Ex.timings
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