Katherine S. Pollard
| Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020) |
| URL: https://git.bioconductor.org/packages/multtest |
| Branch: master |
| Last Commit: 207570d |
| Last Changed Date: 2019-10-29 13:34:30 -0500 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-01-16 13:28:38 -0500 (Thu, 16 Jan 2020).
| Package 1116/1818 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| multtest 2.43.0 Katherine S. Pollard
| malbec2 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: multtest |
| Version: 2.43.0 |
| Command: rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.43.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir |
| StartedAt: 2020-01-16 11:22:29 -0500 (Thu, 16 Jan 2020) |
| EndedAt: 2020-01-16 11:22:55 -0500 (Thu, 16 Jan 2020) |
| EllapsedTime: 25.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: multtest_2.43.0.tgz |
| PackageFileSize: 834.8 KiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf multtest.buildbin-libdir && mkdir multtest.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh multtest_2.43.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R multtest.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=multtest.buildbin-libdir multtest_2.43.0.tar.gz'
>>>>>>>
* installing *source* package ‘multtest’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c Rpack.c -o Rpack.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c VScount.c -o VScount.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c block_sampling_fixed.c -o block_sampling_fixed.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c bootloop.c -o bootloop.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c mt.c -o mt.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c pairt_sampling.c -o pairt_sampling.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c pairt_sampling_fixed.c -o pairt_sampling_fixed.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c random.c -o random.o
random.c:48:6: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^
random.c:48:6: note: use function 'labs' instead
z1=abs(seed); /*setting the seed to z1 and initialize it*/
^~~
labs
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c sampling.c -o sampling.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c sampling_fixed.c -o sampling_fixed.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c stat_func.c -o stat_func.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DUSEDOUBLE -fPIC -Wall -g -O2 -c stat_order.c -o stat_order.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o multtest.so Rpack.o VScount.o block_sampling_fixed.o bootloop.o mt.o pairt_sampling.o pairt_sampling_fixed.o random.o sampling.o sampling_fixed.o stat_func.o stat_order.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/multtest.buildbin-libdir/00LOCK-multtest/00new/multtest/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (multtest)
>>>>>>>
>>>>>>> FIXING LINKS FOR multtest.buildbin-libdir/multtest/libs//multtest.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.3.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.5.2.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libreadline.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "multtest.buildbin-libdir/multtest/libs//multtest.so"