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INSTALL report for motifRG on tokay2

This page was generated on 2020-10-17 11:57:11 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE motifRG PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1128/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifRG 1.32.0
Zizhen Yao
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/motifRG
Branch: RELEASE_3_11
Last Commit: 3aa5da1
Last Changed Date: 2020-04-27 14:29:38 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: motifRG
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/motifRG_1.32.0.tar.gz && rm -rf motifRG.buildbin-libdir && mkdir motifRG.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifRG.buildbin-libdir motifRG_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL motifRG_1.32.0.zip && rm motifRG_1.32.0.tar.gz motifRG_1.32.0.zip
StartedAt: 2020-10-16 18:46:09 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:47:16 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 67.0 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/motifRG_1.32.0.tar.gz && rm -rf motifRG.buildbin-libdir && mkdir motifRG.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=motifRG.buildbin-libdir motifRG_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL motifRG_1.32.0.zip && rm motifRG_1.32.0.tar.gz motifRG_1.32.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  296k  100  296k    0     0  4531k      0 --:--:-- --:--:-- --:--:-- 5033k

install for i386

* installing *source* package 'motifRG' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'motifRG'
    finding HTML links ... done
    Motif                                   html  
    YY1.control                             html  
    YY1.peak                                html  
    ctcf.motifs                             html  
    findMotif                               html  
    findMotifFasta                          html  
    findMotifFgBg                           html  
    getSequence                             html  
    motifLatexTable                         html  
    plotMotif                               html  
    finding level-2 HTML links ... done

    refinePWMMotif                          html  
    refinePWMMotifExtend                    html  
    summaryMotif                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'motifRG' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package can be loaded from final location
Warning: Package 'motifRG' is deprecated and will be removed from Bioconductor
  version 3.12
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'motifRG' ...
** testing if installed package can be loaded
Warning: Package 'motifRG' is deprecated and will be removed from Bioconductor
  version 3.12
* MD5 sums
packaged installation of 'motifRG' as motifRG_1.32.0.zip
* DONE (motifRG)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'motifRG' successfully unpacked and MD5 sums checked