Kasper Daniel Hansen
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/minfi |
| Branch: RELEASE_3_11 |
| Last Commit: c7d7fdd |
| Last Changed Date: 2020-04-27 14:27:18 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:06 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE minfi PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1085/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| minfi 1.34.0 Kasper Daniel Hansen
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: minfi |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/minfi_1.34.0.tar.gz && rm -rf minfi.buildbin-libdir && mkdir minfi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfi.buildbin-libdir minfi_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL minfi_1.34.0.zip && rm minfi_1.34.0.tar.gz minfi_1.34.0.zip |
| StartedAt: 2020-10-16 19:08:38 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:10:31 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 112.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/minfi_1.34.0.tar.gz && rm -rf minfi.buildbin-libdir && mkdir minfi.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=minfi.buildbin-libdir minfi_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL minfi_1.34.0.zip && rm minfi_1.34.0.tar.gz minfi_1.34.0.zip
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install for i386
* installing *source* package 'minfi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'minfi'
finding HTML links ... done
DelayedArray_utils html
GenomicMethylSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMXWgug/R.INSTALL1d9452464e63/minfi/man/GenomicMethylSet-class.Rd:129: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
GenomicRatioSet-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMXWgug/R.INSTALL1d9452464e63/minfi/man/GenomicRatioSet-class.Rd:121: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
IlluminaMethylationAnnotation-class html
IlluminaMethylationManifest-class html
MethylSet-class html
finding level-2 HTML links ... done
RGChannelSet-class html
RatioSet-class html
blockFinder html
bumphunter html
combineArrays html
compartments html
controlStripPlot html
convertArray html
cpgCollapse html
densityBeanPlot html
densityPlot html
detectionP html
dmpFinder html
estimateCellCounts html
fixMethOutliers html
gaphunter html
getAnnotation html
getGenomicRatioSetFromGEO html
getQC html
getSex html
logit2 html
makeGenomicRatioSetFromMatrix html
mapToGenome-methods html
mdsPlot html
minfi-defunct html
minfi-deprecated html
minfi-package html
minfiQC html
plotBetasByType html
plotCpg html
preprocessFunnorm html
preprocessIllumina html
preprocessNoob html
preprocessQuantile html
preprocessRaw html
preprocessSwan html
qcReport html
ratioConvert-methods html
read.metharray html
read.metharray.exp html
read.metharray.sheet html
readGEORawFile html
readTCGA html
subsetByLoci html
utils html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'minfi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'minfi' as minfi_1.34.0.zip
* DONE (minfi)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'minfi' successfully unpacked and MD5 sums checked