Sebastian Bauer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/mgsa |
| Branch: RELEASE_3_11 |
| Last Commit: 5bd0954 |
| Last Changed Date: 2020-04-27 14:24:02 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:05 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE mgsa PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1074/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| mgsa 1.36.0 Sebastian Bauer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: mgsa |
| Version: 1.36.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mgsa_1.36.0.tar.gz && rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mgsa.buildbin-libdir mgsa_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mgsa_1.36.0.zip && rm mgsa_1.36.0.tar.gz mgsa_1.36.0.zip |
| StartedAt: 2020-10-16 17:10:46 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:11:32 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 46.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/mgsa_1.36.0.tar.gz && rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mgsa.buildbin-libdir mgsa_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL mgsa_1.36.0.zip && rm mgsa_1.36.0.tar.gz mgsa_1.36.0.zip
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install for i386
* installing *source* package 'mgsa' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa-core.c -o mgsa-core.o
mgsa-core.c: In function 'ts_R_alloc':
mgsa-core.c:56: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
At top level:
mgsa-core.c:796:13: warning: 'print_context' defined but not used [-Wunused-function]
static void print_context(struct context *cn)
^~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa.c -o mgsa.o
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:552: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
mgsa.c:558: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa-core.o mgsa.o mt.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mgsa.buildbin-libdir/00LOCK-mgsa/00new/mgsa/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mgsa'
finding HTML links ... done
MgsaGoSets-class html
MgsaMcmcResults-class html
MgsaResults-class html
MgsaSets-class html
alphaMcmcPost-methods html
alphaPost-methods html
betaMcmcPost-methods html
betaPost-methods html
createMgsaGoSets html
example-go html
example-o html
itemAnnotations-methods html
itemIndices-methods html
length-methods html
mgsa-methods html
mgsa-package html
nsamples-methods html
pMcmcPost-methods html
pPost-methods html
plot-MgsaResults-method html
populationSize-methods html
readGAF html
restarts-methods html
setAnnotations-methods html
setsMcmcPost-methods html
setsResults-methods html
show-MgsaResults-method html
show-MgsaSets-method html
steps-methods html
studySetSizeInPopulation-methods html
subMgsaSets-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mgsa' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa-core.c -o mgsa-core.o
mgsa-core.c: In function 'ts_R_alloc':
mgsa-core.c:56: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
At top level:
mgsa-core.c:796:13: warning: 'print_context' defined but not used [-Wunused-function]
static void print_context(struct context *cn)
^~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mgsa.c -o mgsa.o
mgsa.c: In function 'mgsa_mcmc':
mgsa.c:552: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
#pragma omp parallel for
mgsa.c:558: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
#pragma omp critical
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa-core.o mgsa.o mt.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/mgsa.buildbin-libdir/mgsa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mgsa' as mgsa_1.36.0.zip
* DONE (mgsa)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'mgsa' successfully unpacked and MD5 sums checked