Lei Huang
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/methyAnalysis |
| Branch: RELEASE_3_11 |
| Last Commit: 793bbef |
| Last Changed Date: 2020-04-27 14:30:56 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:04 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE methyAnalysis PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1055/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| methyAnalysis 1.30.0 Lei Huang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: methyAnalysis |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyAnalysis_1.30.0.tar.gz && rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyAnalysis_1.30.0.zip && rm methyAnalysis_1.30.0.tar.gz methyAnalysis_1.30.0.zip |
| StartedAt: 2020-10-16 19:37:39 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:40:24 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 164.8 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methyAnalysis_1.30.0.tar.gz && rm -rf methyAnalysis.buildbin-libdir && mkdir methyAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methyAnalysis.buildbin-libdir methyAnalysis_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methyAnalysis_1.30.0.zip && rm methyAnalysis_1.30.0.tar.gz methyAnalysis_1.30.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 958k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 958k 100 958k 0 0 4405k 0 --:--:-- --:--:-- --:--:-- 4520k
install for i386
* installing *source* package 'methyAnalysis' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** help
*** installing help indices
converting help for package 'methyAnalysis'
finding HTML links ... done
MethyGenoSet-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:34: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:36: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:46: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:51: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:57: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:58: file link 'colData' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:86: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:91: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:92: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/MethyGenoSet-class.Rd:100: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
MethyLumiM2GenoSet html
annotateDMRInfo html
annotateGRanges html
asBigMatrix-methods html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmpy4D5Bf/R.INSTALL22a43cbf7d72/methyAnalysis/man/asBigMatrix-methods.Rd:15: file link 'GenoSet' in package 'genoset' does not exist and so has been treated as a topic
buildAnnotationTracks html
checkChrName html
createTranscriptTrack html
detectDMR.slideWin html
estimateCMR.methylation html
estimateMethySeq html
exampleMethyGenoSet html
export.DMRInfo html
export.methyGenoSet html
filterBisulfiteVariant html
getContinuousRegion html
getCoverage html
heatmapByChromosome html
identifyCpG html
identifySigDMR html
plotHeatmapByGene html
plotMethylationHeatmapByGene html
plotTracksWithDataTrackInfo html
smoothMethyData html
updateMethyGenoSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'methyAnalysis' ...
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
No methods found in package 'genoset' for request: 'toGenomeOrder' when loading 'methyAnalysis'
* MD5 sums
packaged installation of 'methyAnalysis' as methyAnalysis_1.30.0.zip
* DONE (methyAnalysis)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methyAnalysis' successfully unpacked and MD5 sums checked