Back to Multiple platform build/check report for BioC 3.11
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

INSTALL report for methVisual on tokay2

This page was generated on 2020-10-17 11:57:04 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE methVisual PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1054/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methVisual 1.40.0
Arie Zackay
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/methVisual
Branch: RELEASE_3_11
Last Commit: 8a2f38f
Last Changed Date: 2020-04-27 14:21:10 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  ERROR  OK 

Summary

Package: methVisual
Version: 1.40.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methVisual_1.40.0.tar.gz && rm -rf methVisual.buildbin-libdir && mkdir methVisual.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methVisual.buildbin-libdir methVisual_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methVisual_1.40.0.zip && rm methVisual_1.40.0.tar.gz methVisual_1.40.0.zip
StartedAt: 2020-10-16 17:23:54 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:25:04 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 70.6 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/methVisual_1.40.0.tar.gz && rm -rf methVisual.buildbin-libdir && mkdir methVisual.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methVisual.buildbin-libdir methVisual_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL methVisual_1.40.0.zip && rm methVisual_1.40.0.tar.gz methVisual_1.40.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 24255  100 24255    0     0   151k      0 --:--:-- --:--:-- --:--:--  158k

install for i386

* installing *source* package 'methVisual' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for request: 'score' when loading 'methVisual'
Note: possible error in 'windows(n, lengthData, ': unused argument (rescale = "fixed") 
** help
*** installing help indices
  converting help for package 'methVisual'
    finding HTML links ... done
    Cooccurrence                            html  
    MethAlignNW                             html  
    MethDataInput                           html  
    MethLollipops                           html  
    MethylQC                                html  
    cgInAlign                               html  
    cgMethFinder                            html  
    coversionGenom                          html  
    findNonAligned                          html  
    heatMapMeth                             html  
    makeDataMethGFF                         html  
    makeLocalExpDir                         html  
    makeTabFilePath                         html  
    matrixSNP                               html  
    methCA                                  html  
    methData                                html  
    methFisherTest                          html  
    methWhitneyUTest                        html  
    plotAbsMethyl                           html  
    plotMatrixSNP                           html  
    readBisulfFASTA                         html  
    selectRefSeq                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for request: 'score' when loading 'methVisual'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for request: 'score' when loading 'methVisual'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methVisual' ...
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'score' when loading 'methVisual'
* MD5 sums
packaged installation of 'methVisual' as methVisual_1.40.0.zip
* DONE (methVisual)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'methVisual' successfully unpacked and MD5 sums checked