Hector Corrada Bravo
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/metavizr |
| Branch: RELEASE_3_11 |
| Last Commit: 626d3bf |
| Last Changed Date: 2020-04-27 15:07:24 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:03 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE metavizr PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1045/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| metavizr 1.12.0 Hector Corrada Bravo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: metavizr |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metavizr_1.12.0.tar.gz && rm -rf metavizr.buildbin-libdir && mkdir metavizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metavizr.buildbin-libdir metavizr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metavizr_1.12.0.zip && rm metavizr_1.12.0.tar.gz metavizr_1.12.0.zip |
| StartedAt: 2020-10-16 19:28:58 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:30:56 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 117.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/metavizr_1.12.0.tar.gz && rm -rf metavizr.buildbin-libdir && mkdir metavizr.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metavizr.buildbin-libdir metavizr_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL metavizr_1.12.0.zip && rm metavizr_1.12.0.tar.gz metavizr_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 1239k 100 1239k 0 0 17.3M 0 --:--:-- --:--:-- --:--:-- 18.9M
install for i386
* installing *source* package 'metavizr' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** help
*** installing help indices
converting help for package 'metavizr'
finding HTML links ... done
EpivizMetagenomicsData-class html
EpivizMetagenomicsDataInnerNodes-class
html
EpivizMetagenomicsDataTimeSeries-class
html
MetavizApp-class html
MetavizGraph-class html
MetavizGraphInnerNodes-class html
buildMetavizGraph html
buildMetavizGraphInnerNodes html
generateSelection html
metavizControl html
register-MRexperiment-method html
register-phyloseq-method html
finding level-2 HTML links ... done
replaceNAFeatures html
setMetavizStandalone html
startMetaviz html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:5: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:21: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:18: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetaviz.Rd:30: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
startMetavizStandalone html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetavizStandalone.Rd:5: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/Rtmp4OB7rZ/R.INSTALL242c149f5fca/metavizr/man/startMetavizStandalone.Rd:22: file link 'MetavizApp' in package 'metavizr' does not exist and so has been treated as a topic
validateObject html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'metavizr' ...
** testing if installed package can be loaded
Warning: replacing previous import 'S4Vectors::merge' by 'git2r::merge' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::head' by 'git2r::head' when loading 'epivizrStandalone'
Warning: replacing previous import 'S4Vectors::as.data.frame' by 'git2r::as.data.frame' when loading 'epivizrStandalone'
* MD5 sums
packaged installation of 'metavizr' as metavizr_1.12.0.zip
* DONE (metavizr)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'metavizr' successfully unpacked and MD5 sums checked