Keith Sheppard
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/maanova |
| Branch: RELEASE_3_11 |
| Last Commit: 13c76ca |
| Last Changed Date: 2020-04-27 14:12:05 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:59 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE maanova PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 967/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| maanova 1.58.0 Keith Sheppard
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: maanova |
| Version: 1.58.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/maanova_1.58.0.tar.gz && rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maanova.buildbin-libdir maanova_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL maanova_1.58.0.zip && rm maanova_1.58.0.tar.gz maanova_1.58.0.zip |
| StartedAt: 2020-10-16 17:09:49 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:10:50 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 61.5 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/maanova_1.58.0.tar.gz && rm -rf maanova.buildbin-libdir && mkdir maanova.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maanova.buildbin-libdir maanova_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL maanova_1.58.0.zip && rm maanova_1.58.0.tar.gz maanova_1.58.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 803k 100 803k 0 0 4947k 0 --:--:-- --:--:-- --:--:-- 5184k
install for i386
* installing *source* package 'maanova' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c makeratio.c -o makeratio.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
/*#ifndef IEEE_754
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
masvd.c:165:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
masvd.c:189:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
int i, j, k;
^
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/maanova.buildbin-libdir/00LOCK-maanova/00new/maanova/libs/i386
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maanova'
finding HTML links ... done
PairContrast html
Rmaanova.version html
abf1 html
adjPval html
arrayview html
consensus html
dyeswapfilter html
fill.missing html
fitmaanova html
fom html
geneprofile html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpcPRnKX/R.INSTALL16545fbe5c4c/maanova/man/geneprofile.Rd:31: file link 'plot' in package 'graphics' does not exist and so has been treated as a topic
gridcheck html
kidney html
maanova-internal html
macluster html
matest html
read.madata html
resiplot html
riplot html
subset.madata html
summarytable html
transform.madata html
varplot html
volcano html
write.madata html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maanova' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c makeratio.c -o makeratio.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c masvd.c -o masvd.o
masvd.c:114:2: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
masvd.c:154:1: warning: "/*" within comment [-Wcomment]
/*#ifndef IEEE_754
masvd.c:161:5: warning: "/*" within comment [-Wcomment]
/* work on a copy of x */
masvd.c:165:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
masvd.c:189:2: warning: "/*" within comment [-Wcomment]
/* ask for optimal size of work array */
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c shift.c -o shift.o
shift.c: In function 'shift':
shift.c:27:13: warning: unused variable 'k' [-Wunused-variable]
int i, j, k;
^
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c util.c -o util.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maanova.dll tmp.def makeratio.o masvd.o shift.o util.o -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/maanova.buildbin-libdir/maanova/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maanova' as maanova_1.58.0.zip
* DONE (maanova)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'maanova' successfully unpacked and MD5 sums checked