Florian P Breitwieser
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/isobar |
| Branch: RELEASE_3_11 |
| Last Commit: b9a3005 |
| Last Changed Date: 2020-04-27 14:27:35 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:54 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE isobar PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 898/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| isobar 1.34.0 Florian P Breitwieser
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: isobar |
| Version: 1.34.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/isobar_1.34.0.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL isobar_1.34.0.zip && rm isobar_1.34.0.tar.gz isobar_1.34.0.zip |
| StartedAt: 2020-10-16 17:45:03 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:47:12 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 128.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/isobar_1.34.0.tar.gz && rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=isobar.buildbin-libdir isobar_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL isobar_1.34.0.zip && rm isobar_1.34.0.tar.gz isobar_1.34.0.zip
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install for i386
* installing *source* package 'isobar' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'coerce' with signature '"MSnSet","IBSpectra"': no definition for class "MSnSet"
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "MSnSet"
Note: possible error in 'png(sprintf("pairwise_correlation_%s.png", ': unused argument (title = "Pairwise Correlation plot")
** help
*** installing help indices
converting help for package 'isobar'
finding HTML links ... done
IBSpectra-class html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/IBSpectra-class.Rd:175: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/IBSpectra-class.Rd:176: missing file link 'MSnbase'
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/IBSpectra-class.Rd:178: file link 'MSnSet' in package 'MSnbase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/IBSpectra-class.Rd:232: file link 'ProteinGroup' in package 'isobar' does not exist and so has been treated as a topic
NoiseModel-class html
ProteinGroup-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/ProteinGroup-class.Rd:177: file link 'IBSpectra' in package 'isobar' does not exist and so has been treated as a topic
TlsParameter-class html
Tlsd-class html
calc.delta.score html
calc.startpos html
calculate-pvalues html
calculate.dNSAF html
calculate.emPAI html
correct.peptide.ratios html
distr-methods html
fit-distr html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/fit-distr.Rd:28: file link 'Cauchy' in package 'distr' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpUR40LN/R.INSTALLfc8264f7b32/isobar/man/fit-distr.Rd:28: file link 'Norm' in package 'distr' does not exist and so has been treated as a topic
getPeptideModifContext html
getPhosphoRSProbabilities html
getPtmInfo html
groupMemberPeptides html
human.protein.names html
isobar-analysis html
isobar-data html
isobar-import html
isobar-log html
isobar-package html
isobar-plots html
isobar-preprocessing html
isobar-reports html
maplot.protein html
number.ranges html
observedKnownSites html
peptide.count html
proteinInfo-methods html
proteinNameAndDescription html
ratio-summ html
ratiosReshapeWide html
reporter.protein-methods html
sanitize html
shared.ratios html
shared.ratios.sign html
specificities html
spectra.count2 html
subsetIBSpectra html
utils html
writeHscoreData html
writeIBSpectra html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'isobar' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'isobar' as isobar_1.34.0.zip
* DONE (isobar)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'isobar' successfully unpacked and MD5 sums checked