Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:51 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE iChip PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 850/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iChip 1.42.0 Qianxing Mo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: iChip |
Version: 1.42.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/iChip_1.42.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL iChip_1.42.0.zip && rm iChip_1.42.0.tar.gz iChip_1.42.0.zip |
StartedAt: 2020-10-16 16:59:16 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 16:59:53 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 36.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/iChip_1.42.0.tar.gz && rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iChip.buildbin-libdir iChip_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL iChip_1.42.0.zip && rm iChip_1.42.0.tar.gz iChip_1.42.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2789k 100 2789k 0 0 11.8M 0 --:--:-- --:--:-- --:--:-- 12.2M install for i386 * installing *source* package 'iChip' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iChip.c -o iChip.o iChip.c: In function 'iChip2': iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable] int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum; ^~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/iChip.buildbin-libdir/00LOCK-iChip/00new/iChip/libs/i386 ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'iChip' finding HTML links ... done enrichreg html iChip1 html iChip2 html lmtstat html oct4 html p53 html ** building package indices ** installing vignettes 'iChip.Rnw' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'iChip' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c iChip.c -o iChip.o iChip.c: In function 'iChip2': iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable] int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum; ^~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c registerDynamicSymbol.c -o registerDynamicSymbol.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o iChip.dll tmp.def iChip.o registerDynamicSymbol.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/iChip.buildbin-libdir/iChip/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'iChip' as iChip_1.42.0.zip * DONE (iChip) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'iChip' successfully unpacked and MD5 sums checked